Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2800 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAACCTCATCTGCATGGAACACCAGTTTATTACTATTGCCCACCAACTTTGGAGGAGCGCGAGTTGTTAACCTCTAATGATGCTTCTGCTGCTTCACTCACTGCTGGGTTGCTGATTGGCTTAAACCTGGATGCGTCCACACCTGATACTTTCCAGCCGCCTCCTGCGCCTCTGCCTTATGATGTGGTCTTTGGAGGCTCTGCATCAACAGATTCTGAGTCTGGTAGAGAAACTGTTAGTGGTAGTAGTTTCGAGACTTTAATTGCACGAGAAGATCTCGAAGAAGCTGAAAGTAAAGTTAAAGCTCAAGAAAATTCTGAGCCTATATCTCCAAAGAAGGCAGAGCTATTAAAATCAAATCAGACTCAAGTATTACTGACAGAAGAAGAGGATGTTTGTCCAATTTGTCTCGAAGAATATGATGTTGAGAATCCCAAAAATCTGACGAAATGCGAGCACCACTTTCACCTGTCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGCCCAATATGTGATCAGGTATTGGAAACGAAGAGGGTATACTTTTGTCATCAATCAGTTATGATTTGGTGCGAAATGATCATAGTCTTCCATGTTACAGGAAATGATATTTTGATGAGACGCACATGGCGATTAATTGTTTCAATTTTAAAGATCAAAACTTGCTAA 702 0.4174 MGGCCCSARKPHLHGTPVYYYCPPTLEERELLTSNDASAASLTAGLLIGLNLDASTPDTFQPPPAPLPYDVVFGGSASTDSESGRETVSGSSFETLIAREDLEEAESKVKAQENSEPISPKKAELLKSNQTQVLLTEEEDVCPICLEEYDVENPKNLTKCEHHFHLSCILEWMERSDSCPICDQVLETKRVYFCHQSVMIWCEMIIVFHVTGNDILMRRTWRLIVSILKIKTC* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2800 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 1 185 - -
Amo04g2800 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 196 IPR013083 -
Amo04g2800 233 Pfam Ring finger domain 141 182 IPR001841 -
Amo04g2800 233 SUPERFAMILY RING/U-box 135 190 - -
Amo04g2800 233 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 185 - -
Amo04g2800 233 ProSiteProfiles Zinc finger RING-type profile. 142 183 IPR001841 -
Amo04g2800 233 SMART ring_2 142 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2800 Amo-Chr4 102158390 102162432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2800 1 184 C3H Transcription Factor Family AT4G00335 54.891 7.48e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2800 - - gmx:100792561 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2800 04 102158390 102162432 Amo02g0127 02 1426816 1429595 PCT
Amo02g0127 02 1426816 1429595 Amo04g2800 04 102158390 102162432 PCT