Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2798 ATGGGGTTCCCCGTAGGCTACACGGAAGTCCTCGTCCCAAACATCTTCCTCCGCCTCCTCACCTTCCTCGCCGCCCTCCGAAACCTCGTACTCTCCCTCTTCCGCCTCCTCGGCCTCTCCGAACTCCTCGACACTACCACCACCGACCCCTACCCTCTCTCTTGGACCCAGGCCCACCAGGCCCAATTCCGGCCCACCACCACCACCACAACCACCATCCCTTCCCTCTCCGCTATCCTCATCCGCGAATTCCTCCCCGTCATGAAATTCAGCGACCTAGCCGGCGCCGGAGATTTCATTCCGGCCACGACGGAGAACGGATGCGCTGTTTGCTTGAGCGAATTCTCCGGGGAAGACGAGATCAGGTGTATGGCGAACTGCAGACACGTGTTCCATCGCGGTTGCGTGGACCGTTGGATGGACCACGATCAAAGGACTTGCCCTCTCTGTAGGACTCCTTTCGTTCCCGATCACAAGGTGAACGAGTACAACCAACGCCTCTGGGAAGCTTCTGGAGTAGCGGAATTCTACGCAGATTAA 540 0.587 MGFPVGYTEVLVPNIFLRLLTFLAALRNLVLSLFRLLGLSELLDTTTTDPYPLSWTQAHQAQFRPTTTTTTTIPSLSAILIREFLPVMKFSDLAGAGDFIPATTENGCAVCLSEFSGEDEIRCMANCRHVFHRGCVDRWMDHDQRTCPLCRTPFVPDHKVNEYNQRLWEASGVAEFYAD* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2798 179 Pfam Ring finger domain 108 151 IPR001841 -
Amo04g2798 179 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 156 IPR013083 -
Amo04g2798 179 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 177 - -
Amo04g2798 179 SMART ring_2 108 150 IPR001841 -
Amo04g2798 179 ProSiteProfiles Zinc finger RING-type profile. 108 151 IPR001841 -
Amo04g2798 179 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 177 - -
Amo04g2798 179 SUPERFAMILY RING/U-box 92 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2798 Amo-Chr4 101698271 101699438 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2798 1 174 C3H Transcription Factor Family AT1G63840 46.857 5.37e-51 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2798 K16281 - gmx:100813224 192.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2798 04 101698271 101699438 Amo02g0395 02 4869701 4870572 PCT
Amo02g0395 02 4869701 4870572 Amo04g2798 04 101698271 101699438 PCT