Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2790 ATGGCATCCACCTCTTCTCGAATCCCACGATCATGCACCCATCACGTGTTCTTGAGCTTCAGGGGAGAAGACACTCGCACAGGCTTCACTAGCCATCTCTATGCCGCCCTCAGAAGGAAGGGAATCACAACCTACAAAGATGACAAAAACCTTCGCAAAGGCCTTGTTATTTCAGATGAACTCCTGAAAGCAATCGAAGAGTCGATGTTTGCAGTCATTGTTTTCTCACCGGACTACGCTTCCTCCAGTTGGTGCTTGGATGAGCTCCAAAAGATCATTGAGTGCAACAACAAGCTGGGGATACAGATCGAAGCAGTGTTCTACGGTGTGAAGCCTTGTGATGTGAGGCACCAAATAGGAACCTTTCAGGAAGCTTTCAAGAAACATGAGCAGAGACATGACCGTGAGAAGGTTCAAAGATGGAGGGAAGCGTTAACACAAGTTGCTGCTTATTCCTGTTGGAGCTCCAAAAATCAGGACGAGGCAGTACTTGTGGAAAACATTGCTCAACATATATTTGAAATATTAATTCCAAAGTTACCATCTTCAATGAAGAATCTTGTGGGGATTGAATCAAGAGTGGAACAAGTGATTACTCAAATAGGCCTTGGATTGAATGATGTTCGCTATATGAGCATATGGGGAATGGGTGGTATAGGTAAGACAACTATTGCTAGAGCAGTCTTTGAAACCATTCGAAGTAGATTTGAAGTTACTTGCTTTCTTGCCGATGTAAGAGAACAATGTGAGAAGAAAGATATTACTCAGGTACTTCTTGTTCTTGATGATGTAAATCATGAAAAGCAATTAGAGAATTTGGCTGGGGAGAAAGATTGGTTTGGTCCTGGAAGCAGAATAATAATTACAACTAGAGACGTAGAGGTGGTAAAGGAACAAGAGGTGCATGAAACTTATAAAGTTGAAGCGTTAGTGGAAAGTGAAGCCTTTAACCTCTTTTGTTCGAAAGCTTTTAAACGGTCAAAACCTTCAGGAGGGTTTTTGGATTTGTCAAAAAAAGTGGTGAATTATAGTGGTGGTCTTCCATTGGCACTTAAAGTGTTGGGTTCCTATCTTAATGGTAGACCTATTGTGGTATGGCATAGTGCTATGGAAAAAATAAAGAAGTCTTCACATTCTGAAATTATTGATGTATTAAAAATAAGCTATGATGGTTTAGATTCAACGGAAAAGAATATTTTTCTGGATATTGCTTGTTTCTTTAAAGGACGTGGGAAAGATTATGTAACAAGGATACTAAAAGGATGTGGTCATGATGCTGAAATTGGTATTGATATTTTGATTAATAGATCATTGGTCACATTAGAGCAGGAGACATTCGGGAAGGTTACTCTGGGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTAATTCAAGAATCTCCAAGTGATGCTAGTAAGCGTGGCAGATTGTGGTGTTACGAGGATGTTGATTTTGTATTTACTCATAAGAAGCTAAAGCTTCTCATTTTAGATGGCATGACAGCTCTCACTCTCTGTGATATTCCTTGCACATTAAAGGTTTTGCACTGGATATATTGTCCAATGAAAACTTTGCCCTTTGCAGATCAACGTTATGAACTTGTTGAAATTGATCTGTCTTATAGCATAATTGTACAGTTATGGGATGGAAAGAAGTTTCTAAAAGATTTAAAGCACTTGAATCTGTCTGGCTGCTACAAGTTGGAGCAAACGCCAGATCTTTCCGAGGTTCCCAATCTTAAAACACTTAATCTCGAGGAATGTAGGGAGTTGAATCATATCCACCCTACTCTCGCACACCACAAGAGCCTTGTTGAATTGATTTTACGGGGATGTAGCAGTCTTGAAACACTTGCAGATAAATTGGAAATGAGTTCACTCGAGAGACTAAATCTATGTAGCTGCTATAGATTGAGAAGATTGCCAGAATTTGGAGAATGCATGAAACAGTTAACGATTCTTACTTTGAGATTTACAGACATAAAAGAGCTACCGAGTACTCTTGGAAATTTGGTTGGTCTGTCTAAGTTAGACTTAGCGGCATTGGAGTCTATTGTTCTTCCTGTATCACTTGGATGTTTCGTTGGCCTAAAGAAGTTGGACTTAAGTGGATGCAACGAGCTTAGTTGTGTTCCGTACAGTAGTCATGGATTAGAGTCCCTCACAGTTTGGGATTCATCTGACAACTCAAATATCGTTGGCCTTTTGAGTTCTCTTTCCCTTCTGACCTCTTTGAGTAGTCTGAAATTATGGGTGAGTTTTCCCACATCTAAAGAGTACGATCTTGGCCACTTAGCATCGTTGTCGGATTTGGATTTATCTATCCATGAACTTCCCAGATTAAAATGTCTGAACCTAAATAATTGCAGTTTTTTGGAGGTTTTGCCAGAGCTTCCATCAAGTCTAAGAGAACTACGCGCAGAGGATTGTTATTCACTGGATGCATCCAGTGTGAATGATGTTATTTCAAAGGCGTGTTGTGTCTTTGCAGAATCAGCAAGCAAAGATTGTGAAGATATCTTGCAAGTGTTGATCCATGGGAAGGAAATTCCAGCATGGTTTGAGCATCAGGAACAAGATAACGCAGTATCACTCTCATTCCCGCATAATGGCACTTCAACCGAAACCCTGGCACTTGCCCTGTGTTTTCTATTTGAAGATGAAACGTTTTCAAATGAGCAGCCTTCGATGATCTGCAACGGTAAAGAATTCATCAGTAAGAGTTTATTGAAGGTGTCGTCATGTATATGTTCTGAGAATTTGTTCATTGTCTGCCTGAACGGTTGCTATTTTAGTAACCTGTTAAGCCAACACAATCGCTTCCAAATGCTATTTCCCAATATCGAAGTTCAGAGATGTGGAGCACGTTGGGTGTGTAAGCAAGACACTCAAGATTTCAAGAAATGA 2913 0.4006 MASTSSRIPRSCTHHVFLSFRGEDTRTGFTSHLYAALRRKGITTYKDDKNLRKGLVISDELLKAIEESMFAVIVFSPDYASSSWCLDELQKIIECNNKLGIQIEAVFYGVKPCDVRHQIGTFQEAFKKHEQRHDREKVQRWREALTQVAAYSCWSSKNQDEAVLVENIAQHIFEILIPKLPSSMKNLVGIESRVEQVITQIGLGLNDVRYMSIWGMGGIGKTTIARAVFETIRSRFEVTCFLADVREQCEKKDITQVLLVLDDVNHEKQLENLAGEKDWFGPGSRIIITTRDVEVVKEQEVHETYKVEALVESEAFNLFCSKAFKRSKPSGGFLDLSKKVVNYSGGLPLALKVLGSYLNGRPIVVWHSAMEKIKKSSHSEIIDVLKISYDGLDSTEKNIFLDIACFFKGRGKDYVTRILKGCGHDAEIGIDILINRSLVTLEQETFGKVTLGMHDLLEEMGKQIVIQESPSDASKRGRLWCYEDVDFVFTHKKLKLLILDGMTALTLCDIPCTLKVLHWIYCPMKTLPFADQRYELVEIDLSYSIIVQLWDGKKFLKDLKHLNLSGCYKLEQTPDLSEVPNLKTLNLEECRELNHIHPTLAHHKSLVELILRGCSSLETLADKLEMSSLERLNLCSCYRLRRLPEFGECMKQLTILTLRFTDIKELPSTLGNLVGLSKLDLAALESIVLPVSLGCFVGLKKLDLSGCNELSCVPYSSHGLESLTVWDSSDNSNIVGLLSSLSLLTSLSSLKLWVSFPTSKEYDLGHLASLSDLDLSIHELPRLKCLNLNNCSFLEVLPELPSSLRELRAEDCYSLDASSVNDVISKACCVFAESASKDCEDILQVLIHGKEIPAWFEHQEQDNAVSLSFPHNGTSTETLALALCFLFEDETFSNEQPSMICNGKEFISKSLLKVSSCICSENLFIVCLNGCYFSNLLSQHNRFQMLFPNIEVQRCGARWVCKQDTQDFKK* 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2790 970 Pfam TIR domain 14 188 IPR000157 GO:0007165
Amo04g2790 970 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 256 501 - -
Amo04g2790 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 252 IPR044974 GO:0006952
Amo04g2790 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 256 501 IPR044974 GO:0006952
Amo04g2790 970 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 514 684 IPR044974 GO:0006952
Amo04g2790 970 Pfam NB-ARC domain 256 389 IPR002182 GO:0043531
Amo04g2790 970 Gene3D - 177 256 IPR027417 -
Amo04g2790 970 ProSiteProfiles TIR domain profile. 12 176 IPR000157 GO:0007165
Amo04g2790 970 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 152 IPR035897 -
Amo04g2790 970 SUPERFAMILY L domain-like 483 815 - -
Amo04g2790 970 Gene3D - 309 393 IPR042197 -
Amo04g2790 970 PRINTS Disease resistance protein signature 210 225 - -
Amo04g2790 970 PRINTS Disease resistance protein signature 344 358 - -
Amo04g2790 970 PRINTS Disease resistance protein signature 577 593 - -
Amo04g2790 970 Gene3D - 11 176 IPR035897 -
Amo04g2790 970 SMART till_3 13 151 IPR000157 GO:0007165
Amo04g2790 970 SUPERFAMILY "Winged helix" DNA-binding domain 379 486 IPR036390 -
Amo04g2790 970 Pfam C-JID domain 848 965 IPR045344 -
Amo04g2790 970 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 13 252 - -
Amo04g2790 970 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 514 684 - -
Amo04g2790 970 Gene3D Ribonuclease Inhibitor 647 829 IPR032675 -
Amo04g2790 970 Gene3D Ribonuclease Inhibitor 485 646 IPR032675 -
Amo04g2790 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 403 IPR027417 -
Amo04g2790 970 Gene3D - 257 304 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2790 Amo-Chr4 101602808 101607717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2790 7 750 WRKY Transcription Factor Family AT4G12020 28.779 4.08e-80 284
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2790 - - adu:107485881 1353.19