Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2781 ATGGCATCCGGGTCCTCTTTTGGTTCAATTCCACTGCCAACAAGAGCATGCACCTATCACGTGTTTTTGAGTTTCAGGAGTGAAGACACTGGAAAATTCACTATCCATCTCTATAACACCCTCAACAGAAAGGGAATCACAACCTACAGAGATGATAACAAACTTCGCAAAGACGATGTTATTTCAGATGAACTCCTGAAAGCAATTGAACAATCGATGTTTGCAGTCATTGTTTTCTCACCAGACTACGCTTCCTCCAGTCAGTGCTTGGATGAGCTCCAAAAGATCTTGGAGTGCAACAACAAACTGGGGCTACATATCCGGACAGTGTACTACGGTGTGGAGCCTAGTGATGTGAGGCACCAAAGAGGAACCTTTGAGAAAGCTTTCAAAAAACACGAAGAGAGACATGACCGTGAGAAGGTCAAAAGATGGAGAGATGCGCTAACACAAGTTGCTGCTCTTAAAGGTTGGACCTCCAAAAATCAGGACGAAGCAGGACTTGTGAAAAATATTGCTCAACATATATTTGAAATATTGATTTCTAAGTTGCCATCTTCAATGAAGAATTTTGTGGGGATTAATTCAAGAGTGGAACAAGTGATTACTCTAATTGGCCTTGGATTGAATGATGTTCGCTTTATAGGCATATGGGGAATGGGTGGCATGGGTAAGACCACTATTGCTAGAGCAGTCTTTGAAACCATTCGATATAATTTTGAAGTTACTTGCTTTCTTGCCGACGTTAGGGAGCAATGCGAGAAAAAAGATATTACTGACATACAAAAGGAACTTCTTAAACAAATGAATATAAGTTCAAATGCTGTTCATAATAAGTATGATGGGAGGACAATAATTCAAAACTCTTTACGTCTCAAAAAGGTACTTCTTGTTCTTGATGATGTAAATCATGAAAAACAATTAAAGGATTTGGCTGGGGAGCAAGATTGGTTTGGTCCTGGAAGCAGAATAATAATTACAACTAGAGACTTAATGGTGCTAAAGGAAGAGGTGCATAAAACTTATAACGTTGAAGGGTTAATGGAAAGTGAAGCCCTTAACCTCTTTTCTTTAGAAGCTTTTAACCTGCCAAAACCTTCAGAAGAGTTTTTGGAGTTGTCCAAAGAAGTGGTCAAATACAGCGGTGGTCTCCCATTGGCACTTAAAGTATTGGGTTCCTATCTTAATGGTAGAGGTATTGAGGTTTGGCATAGTGCTATTGAAAAAATAAAGCATTTTTCACATTCTGAAATTATTGATGTATTGAAAATAAGCTATGATGGTTTAGATGATATGGAAAAAGATATTTTTCTAGATATTGCTTGTTTCTTTAAAGGATATCAGATAGGTGATGTAACAAGGAAATTAAAAGGATGTGGTTATCAGGTTGAAATTGGTCTTGATATTTTGATTAACAAATCATTGGTCACTATAAATAAATATGATCAATTGGTGATGCATGATCTGGTTGAAGAAATGGGCAAACAAATTGTAATTCAAGAATCTCCAAATGATCCTAGTAAGCGTAGCAGATTGTGGTGTTACGAGGATCTTAATTCTGTACTTGCTCAAAAGAGGGAGCATTTGAGATTTGAAGCCTTCTCCAAACTAAAGCTGTCAAAACTTCTCATATTATGTGGTGTGGAAGTGGAAGTGGAACCTCCATCCGACCTTCCTTGCCTTCCTAGCACATTAAAAGTTCTGCACTGGTGGAGATGTCCTTTGAAAACACTACCCCTTGCAGAAACAGAACATGAATTTGCTGAAATTGAACTACGATTTAGCAGAATTGAGGAACTTTGGCTTGGGAAAAAGTTTCTTGGAAACCTGAAATACTTGAATTTGAGTCATTCATGGTATTTAAAGGAAACACCTGACTTTTCTGGGACTCCTATTCTTGAAACACTTATTCTTGGTGACTGTCCAGACCTCAGAGAGGTTCATCCATCCCTTGTACTACATGAGAATCTTGTTCTGTTGGACTTAAGCAAGTGTATAAGTCTTAAAACTTTTCCGGGAATACTGTATATGACATCCCTCAAGGAGTTAATTCTAAAGGACTGCCGGAGTTTTGAAAATAGACCAGAATTCGGGGAAGGGAACGGCTGTGAGGGAATTGCCTTCCTCACTTTTTCGCCTTCCCATCACTATCAATAA 2157 0.3848 MASGSSFGSIPLPTRACTYHVFLSFRSEDTGKFTIHLYNTLNRKGITTYRDDNKLRKDDVISDELLKAIEQSMFAVIVFSPDYASSSQCLDELQKILECNNKLGLHIRTVYYGVEPSDVRHQRGTFEKAFKKHEERHDREKVKRWRDALTQVAALKGWTSKNQDEAGLVKNIAQHIFEILISKLPSSMKNFVGINSRVEQVITLIGLGLNDVRFIGIWGMGGMGKTTIARAVFETIRYNFEVTCFLADVREQCEKKDITDIQKELLKQMNISSNAVHNKYDGRTIIQNSLRLKKVLLVLDDVNHEKQLKDLAGEQDWFGPGSRIIITTRDLMVLKEEVHKTYNVEGLMESEALNLFSLEAFNLPKPSEEFLELSKEVVKYSGGLPLALKVLGSYLNGRGIEVWHSAIEKIKHFSHSEIIDVLKISYDGLDDMEKDIFLDIACFFKGYQIGDVTRKLKGCGYQVEIGLDILINKSLVTINKYDQLVMHDLVEEMGKQIVIQESPNDPSKRSRLWCYEDLNSVLAQKREHLRFEAFSKLKLSKLLILCGVEVEVEPPSDLPCLPSTLKVLHWWRCPLKTLPLAETEHEFAEIELRFSRIEELWLGKKFLGNLKYLNLSHSWYLKETPDFSGTPILETLILGDCPDLREVHPSLVLHENLVLLDLSKCISLKTFPGILYMTSLKELILKDCRSFENRPEFGEGNGCEGIAFLTFSPSHHYQ* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2781 718 Coils Coil 580 600 - -
Amo04g2781 718 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 693 IPR044974 GO:0006952
Amo04g2781 718 SUPERFAMILY Toll/Interleukin receptor TIR domain 15 158 IPR035897 -
Amo04g2781 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 440 IPR027417 -
Amo04g2781 718 Gene3D - 346 430 IPR042197 -
Amo04g2781 718 PRINTS Disease resistance protein signature 675 691 - -
Amo04g2781 718 PRINTS Disease resistance protein signature 381 395 - -
Amo04g2781 718 PRINTS Disease resistance protein signature 289 303 - -
Amo04g2781 718 PRINTS Disease resistance protein signature 214 229 - -
Amo04g2781 718 SUPERFAMILY L domain-like 500 697 - -
Amo04g2781 718 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 693 - -
Amo04g2781 718 Gene3D - 182 345 IPR027417 -
Amo04g2781 718 Gene3D Ribonuclease Inhibitor 517 699 IPR032675 -
Amo04g2781 718 Gene3D - 16 181 IPR035897 -
Amo04g2781 718 SMART till_3 18 155 IPR000157 GO:0007165
Amo04g2781 718 ProSiteProfiles TIR domain profile. 17 180 IPR000157 GO:0007165
Amo04g2781 718 Pfam TIR domain 19 186 IPR000157 GO:0007165
Amo04g2781 718 Pfam NB-ARC domain 210 421 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2781 Amo-Chr4 101430187 101434430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2781 19 697 WRKY Transcription Factor Family AT4G12020 29.395 1.40e-78 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2781 - - ahf:112744165 1364.75