Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2726 ATGGGTTACCTGAGCAAAACTTCAAGGACTCTAAGGCAATCAAATTACCTCTCTCTATTACGAAATTCAACCTTTTTCCCATTCAACCCATTAAGCAGCACCACCTTTCATCACCAACAGCGTGCACTCTTGTGTTCTCAGTCGCGGCAACAAAACATTAAGGATAAGAGCGCCATAGATTTGAGCCAGTACCCTCCTGAACTCATTCGAAATTTCTCAATCATTGCGCATGTTGATCATGGCAAGTCTACCCTCGCTGATCGACTCCTTGAACTCACTGCTACCATTAAAAAGGGACATGGCCAGCCCCAATATCTTGATAAGTTGCAGGTGGAGAGAGAAAGGGGAATCACAGTTAAAGCACAGACAGCAACAATGTTCTATAAGCACAGGACAAATGGTGATGATCATAGTGAGGGAAAGGATTCACCTAGTTTTTTGCTGAATCTTATTGACACTCCCGGTCATGTGGATTTTAGCTATGAGGTGTCAAGGTCACTAGCAGCTTGTCAAGGCGTACTTTTGGTTGTTGATGCCGCGCAAGGAGTCCAAGCGCAAACTGTTGCTAATTTCTACCTTGCTTTTGAGGCCAACCTGACAATTGTACCTGTAATAAACAAGATTGACCAGCCAACTGCTGATCCTGATCGCGTTAAAGCCCAATTGAAATCAATGTTTGATCTTGACCCTAGTGATGCATTGCTAACATCTGCTAAAACTGGAAAGGGTCTTGAGCAAGTCCTTCCAGCTGTTATAGAGCGCATCCCTCCTCCTCCTGGAAAGAGTGATAGTTCTCTGCGTATGCTTTTACTTGATTCATACTATGATGAATACAAGGGGGGGGATAAGATTTCATCTGCTGCTACTGGTCAGTCATATGAAGCTTTGGATATTGGTATCATGCATCCTGAGCTTACACCTACTGGAATCTTGCTTACTGGTCAAGTTGGTTATGTTGTAAGTGGCATGCGTTCAACAAAAGAAGCCCGTGTTGGAGATACAATTTACCATACTCGAAACACTGTAGAGCCTCTCCCAGGATTTAAACCAGCAAAGCATATGGTTTTCTCTGGTCTTTATCCAGCAGATGGATCTGATTTTGAAGCACTCAACCATGCAATAGAGAGGCTGACATGTAATGATGCCAGTGTCTCTATTACTAAAGAAACTAGCACAGCTCTAGGTTTGGGTTTCAGGTGTGGATTTCTGGGCTTACTTCACATGGATGTTTTTCATCAACGGCTTGAACAGGAGTATGGAGCTCATGTTATCTCAACTGTTCCTACTGTGCCTTATATATTTGAATATTCTGATGGAAGCAAATTAGAAGTTCAGAATCCTGCTACGTTACCCTCTAATCCCAAGCAACGAGTGACAGCATGTTGGGAACCTACAGTATTAGCTACTATAATCATTCCTAGTGAGTATGTGGGACCAGTTATCACCCTTTGCTCTGAGCGTAGGGGTCAGCAGTTGGAGTACTCATTCATTGACAGTCAACGGGCATTCATGAAGTATCGCATGCCTTTGAGAGAAATTGTTGTTGACTTCTATAATGAATTGAAGAGCATAACATCAGGCTATGCATCATTCGATTATGAGGATGCAGATTATCAGCAATCTGATCTGGTGAAACTCGATATCCTCTTAAATGGACAACCTGTTGATGCGATGTCAACTATTGTTCATAACATGAAAGCATATCGCGTTGGGCGTGAACTAGTAGAGAAATTGAAGAAAGTCATAGACAGGCAAATGTTTGAGATAACGATACAAGCTGCCATTGCTTCAAAGATTATAGCAAGAGAGACGATTTCTGCGATGAGGAAGAATGTTCTTGCAAAGTGTTACGGTGGCGATGTTACTCGAAAGCGAAAGCTGTTGGAAAAGCAAAAGGAAGGAAAGAAGCGAATGAAACGCATTGGCTCCGTTGATATACCGCAGGAAGCATTCCATGAATTATTGAAGGTTTCATAG 1977 0.4254 MGYLSKTSRTLRQSNYLSLLRNSTFFPFNPLSSTTFHHQQRALLCSQSRQQNIKDKSAIDLSQYPPELIRNFSIIAHVDHGKSTLADRLLELTATIKKGHGQPQYLDKLQVERERGITVKAQTATMFYKHRTNGDDHSEGKDSPSFLLNLIDTPGHVDFSYEVSRSLAACQGVLLVVDAAQGVQAQTVANFYLAFEANLTIVPVINKIDQPTADPDRVKAQLKSMFDLDPSDALLTSAKTGKGLEQVLPAVIERIPPPPGKSDSSLRMLLLDSYYDEYKGGDKISSAATGQSYEALDIGIMHPELTPTGILLTGQVGYVVSGMRSTKEARVGDTIYHTRNTVEPLPGFKPAKHMVFSGLYPADGSDFEALNHAIERLTCNDASVSITKETSTALGLGFRCGFLGLLHMDVFHQRLEQEYGAHVISTVPTVPYIFEYSDGSKLEVQNPATLPSNPKQRVTACWEPTVLATIIIPSEYVGPVITLCSERRGQQLEYSFIDSQRAFMKYRMPLREIVVDFYNELKSITSGYASFDYEDADYQQSDLVKLDILLNGQPVDAMSTIVHNMKAYRVGRELVEKLKKVIDRQMFEITIQAAIASKIIARETISAMRKNVLAKCYGGDVTRKRKLLEKQKEGKKRMKRIGSVDIPQEAFHELLKVS* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2726 658 PRINTS GTP-binding elongation factor signature 114 122 IPR000795 GO:0003924|GO:0005525
Amo04g2726 658 PRINTS GTP-binding elongation factor signature 201 210 IPR000795 GO:0003924|GO:0005525
Amo04g2726 658 PRINTS GTP-binding elongation factor signature 149 159 IPR000795 GO:0003924|GO:0005525
Amo04g2726 658 PRINTS GTP-binding elongation factor signature 71 84 IPR000795 GO:0003924|GO:0005525
Amo04g2726 658 TIGRFAM small_GTP: small GTP-binding protein domain 72 247 IPR005225 GO:0005525
Amo04g2726 658 PANTHER TRANSLATION FACTOR GUF1-RELATED 56 656 IPR006297 GO:0005525
Amo04g2726 658 Pfam GTP-binding protein LepA C-terminus 550 656 IPR013842 -
Amo04g2726 658 Gene3D Elongation Factor G (Translational Gtpase), domain 3 346 427 - -
Amo04g2726 658 Gene3D - 67 260 IPR027417 -
Amo04g2726 658 CDD lepA_C 463 542 IPR035654 -
Amo04g2726 658 Pfam Elongation factor G C-terminus 463 548 IPR000640 -
Amo04g2726 658 SUPERFAMILY EF-G C-terminal domain-like 462 556 IPR035647 -
Amo04g2726 658 CDD EF4_III 353 428 - -
Amo04g2726 658 Pfam Elongation factor Tu GTP binding domain 69 256 IPR000795 GO:0003924|GO:0005525
Amo04g2726 658 PANTHER TRANSLATION FACTOR GUF1, MITOCHONDRIAL 56 656 - -
Amo04g2726 658 SUPERFAMILY EF-G C-terminal domain-like 354 431 IPR035647 -
Amo04g2726 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 280 IPR027417 -
Amo04g2726 658 CDD LepA 70 258 - -
Amo04g2726 658 SUPERFAMILY Translation proteins 257 341 IPR009000 -
Amo04g2726 658 TIGRFAM lepA: elongation factor 4 68 657 IPR006297 GO:0005525
Amo04g2726 658 Hamap Elongation factor 4 [lepA]. 65 658 IPR006297 GO:0005525
Amo04g2726 658 Gene3D - 428 541 - -
Amo04g2726 658 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 67 259 IPR000795 GO:0003924|GO:0005525
Amo04g2726 658 Gene3D Translation factors 261 345 - -
Amo04g2726 658 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 107 122 IPR031157 -
Amo04g2726 658 Gene3D - 542 616 IPR038363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2726 Amo-Chr4 100626200 100631186 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2726 69 210 Eukaryotic Initiation Factors Gene Family AT1G56070 40.278 3.46e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2726 K21594 - gmx:100781092 1153.66