LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g2725	GGTTATTATGTGAAATTGGAAGAGAGGTCTACTACTAGAGACATAACAATAATGGAAGAGAAGAGAGTAAGTTCCATTAGTTTTGAAGATTCTGTTACAAAGGGTGAGGTGAAAGAAGAAAATGGTAGGTTGAAGATGATCACAGAAAGAGTAGAAGAGAATTATCACTCTCTTCAACTCCAATTCTTTGATATCCTTACAAAAAAAGCATTCAAAGAAGTTGTGAGTGATTCAGCTACTAACACAATTGGTGATGAAACTGAAGAGGAGCATGAACTTGTTTCACTTTGCCTTGGAAGGAATCCAAGTAAGCATAACAAAGATGTTGCAAGAATTGGAAACAACTCCAAAAACAAGGTTAATAAAGAAAATGAAGAGTTTGAAAAACCATGTTTAACTCTTGGATTAGACTCTAAATGTGTGCTGCCAAAGGAATCGGCAGAGGAAACTTTGTCATCAATAACACAGAAACATCAAGTGAAAGTGAAAAATAGTTCAAATGATGGAAGTTCAGATCAAATGCCTGCTAAGAGAGCCAGAGTTTCTGTTAGAGCTAGATGTGATTCTCCTACGATGAATGATGGATGCCAATGGAGAAAATATGGACAGAAAATAGCAAAAGGAAATCCATGTCCACGAGCATACTATCGTTGCACGGTCGCACCGGCATGTCCGGTTAGGAAACAGGTGCAAAGATGTGCTGAAGACTTGTCCATCTTGATCACAACATACGAAGGAACACATAACCATCCACTTCCATTTTCAGCATCAGCCATAGCTTCCACAACTTCTGCTGCAGCTTCCATGCTTATTTCAGGTTCTTCAGAGAGTCACAATTCTTCATTTTTTAAAAATGTGTCAACACTACACAGTGGTGTTACTGGTGTATGTCTTGGTCAGCAGTTTGATCAATCAAGAGCAACAAAAAATGTCTTCCTACCAAACAATAATGTAACTTTAGACCTCACTTCTTCTGCTTCAAACACTTTATTACCTTCAAACACTTCTTCTGCTAACCTTTTCACAATGCCTATTCCTTTTGTGGAGAAAACACACATAATAAGGCCAGTTATGTTGAGAAACTCTTCAAGTTGGGGTAAGCATTTTTATGAAGAGTGCATGAGGAACCGAACTCTTCATCCTCCAAAGGATGCTTTTTTAGCAGAAACAATAACAAAAGCAATGAAAACAGATCCAAGTCTTCATTCTGTGATAGCTGCTGCAGTTTCATCTATTGTGGGGCAACAAGGATATTCAACAAGTTGCAACAACCAAGAAGGAACAGAGATTCTTATACCTTCAACTCAAGTGGGATCTTCCATTCCCTTCAATCAAAGTAACAAAGGATACATAGAAATAGAAGGGTACTTCAAAAGATTGTTGTCCTCAAGTTCTGGTGCTGGAGACATGCTTCCATAG	1419	0.382	GYYVKLEERSTTRDITIMEEKRVSSISFEDSVTKGEVKEENGRLKMITERVEENYHSLQLQFFDILTKKAFKEVVSDSATNTIGDETEEEHELVSLCLGRNPSKHNKDVARIGNNSKNKVNKENEEFEKPCLTLGLDSKCVLPKESAEETLSSITQKHQVKVKNSSNDGSSDQMPAKRARVSVRARCDSPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPACPVRKQVQRCAEDLSILITTYEGTHNHPLPFSASAIASTTSAAASMLISGSSESHNSSFFKNVSTLHSGVTGVCLGQQFDQSRATKNVFLPNNNVTLDLTSSASNTLLPSNTSSANLFTMPIPFVEKTHIIRPVMLRNSSSWGKHFYEECMRNRTLHPPKDAFLAETITKAMKTDPSLHSVIAAAVSSIVGQQGYSTSCNNQEGTEILIPSTQVGSSIPFNQSNKGYIEIEGYFKRLLSSSSGAGDMLP*	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g2725	472	ProSiteProfiles	WRKY domain profile.	187	253	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo04g2725	472	MobiDBLite	consensus disorder prediction	151	173	-	-
	Amo04g2725	472	PANTHER	WRKY TRANSCRIPTION FACTOR 72-RELATED	31	467	-	-
	Amo04g2725	472	SUPERFAMILY	WRKY DNA-binding domain	185	253	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo04g2725	472	SMART	WRKY_cls	192	252	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo04g2725	472	Pfam	WRKY DNA -binding domain	193	251	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Amo04g2725	472	Gene3D	WRKY domain	177	254	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Amo04g2725	472	MobiDBLite	consensus disorder prediction	151	182	-	-
	Amo04g2725	472	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	31	467	IPR044810	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g2725	Amo-Chr4	100623680	100626178	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g2725	36	267	WRKY Transcription Factor Family	AT5G15130	50.775	8.32e-65	216

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Amo04g2725		WRKY	5e-24	CL0274