Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2699 ATGGCAGAAAGTACAAGGAAACTTGCCCTTATTTTCTTGGTTACTTTTGCCATTGTTATTCCATGCATTAAGGCTGGCATTGCTGAATATGATGATTTTCTCAAGGCACAAGCTGAGATGGCCCATGAAATTGCCCTTGAGTCCTTCGTTCCTAATCCCTTGAACGTTACATCTGAGCTCAATCTCCACGTTCATCTGGCAATGGAGGAAGCAGCAAACATGACAAGGAGGAATCTAAGGCAAGGACATGCATTCGATCCACATGCACCATGCGAGGCCACTAACCCTATTGACCGTTGCTGGAGGTGCCGTGCCGATTGGGCCAAAAACCGCCAATTGTTGGCCAAATGTGGAAAGGGTTTCGGACGTAGGGCCGTCGGAGGCCTCGGTGGCCCCATCTACGTCGTCACCGACGAATCCGATAACGATTTGGTTAACCCTGCTCCCGGAACCCTAAGACATGCCGTTACTCAGAAGGGACCCTTGTGGATCATCTTTGCACGCAGCATGGTTATTAGATTGCAACAAGAGTTGTTGATTTCCTCCGACAAGACCATCGACGGCCGTGGTGCTCATGTTATGATCAGGGACGGCGCTGGCCTCACTATGCAATTCGTCAACAATATCATTGTCCATAACCTCCACATCAAGAAGATCAAGTCCATGGCTGGTGGCATGATTAGGGATTCTTACAACCATGTTGGTCAAAGAACAAGGAGTGATGGTGATGCCATCTCCATTTTCGGATCCTCCAACATTTGGGTTGATCACATTTCCATGTCTGAGTGTGATGATGGTCTTGTTGACGTTATCCAGGGCTCTACCGCCATCACCATCTCCAATTGCCACATGACCAAGCATAACGACGTGATGTTGTTCGGAGCTAGTGACTCGTACACCGGCGACAAGATCATGCAAATCACGGTAGCATTCAACCACTTCGGACAAGGATTGATTCAGAGGATGCCAAGGTGCAGATATGGATTCTTCCATGTGTTGAACAATGACTACACTCATTGGTTGATGTATGCCATTGGAGGAAGCTCAGGGCCAACAATTCTGAGCCAAGGAAACCGTTTCATTGCACCAAACAACAATGCTGCCAAGGAAATCACACACAGAGACTATGCACCAAAAGAGGTGTGGTCAAAGTGGCAATGGACCTCAGATCACGACCTCTTCATGAATGGTGCCACGTTTCTTCAATCTGGTCAACCAATCACTAAGCTGCAAAATGTCAACAAAGGGATGATAATGAAGCCAAGACCTGGTAGCCATGCCAATAGGCTAACAAAGTATGCTGGTGCCCTTGGTTGTATTGTAGGCAAGCCTTGCTAG 1338 0.4776 MAESTRKLALIFLVTFAIVIPCIKAGIAEYDDFLKAQAEMAHEIALESFVPNPLNVTSELNLHVHLAMEEAANMTRRNLRQGHAFDPHAPCEATNPIDRCWRCRADWAKNRQLLAKCGKGFGRRAVGGLGGPIYVVTDESDNDLVNPAPGTLRHAVTQKGPLWIIFARSMVIRLQQELLISSDKTIDGRGAHVMIRDGAGLTMQFVNNIIVHNLHIKKIKSMAGGMIRDSYNHVGQRTRSDGDAISIFGSSNIWVDHISMSECDDGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYTGDKIMQITVAFNHFGQGLIQRMPRCRYGFFHVLNNDYTHWLMYAIGGSSGPTILSQGNRFIAPNNNAAKEITHRDYAPKEVWSKWQWTSDHDLFMNGATFLQSGQPITKLQNVNKGMIMKPRPGSHANRLTKYAGALGCIVGKPC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2699 445 SUPERFAMILY Pectin lyase-like 95 436 IPR011050 -
Amo04g2699 445 SMART amb_all 169 366 IPR002022 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Amo04g2699 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Amo04g2699 445 Pfam Pectate lyase 178 360 IPR002022 -
Amo04g2699 445 PANTHER PECTATE LYASE 5 445 - -
Amo04g2699 445 PANTHER PECTATE LYASE 18-RELATED 5 445 IPR045032 GO:0030570
Amo04g2699 445 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Amo04g2699 445 Gene3D - 94 438 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2699 Amo-Chr4 100205433 100207916 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2699 10 445 Polysaccharide Lyase AT1G14420 56.444 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2699 K01728 - gmx:100780236 685.641