Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2683 TCAAACAGACATAGATGGACGGGTAGGTTTGAGGCTCATTTATGGGACAAGCTTTCTTGGAATGTAACTCAAAAAAAGAAAGGGAAGCAAGGTGCTTATGATGAAGAAGAATCTGCTGCCAGAGCATATGATTTAGCAGCACTTAAGTATTGGGGAACATCAACTTTTACTAATTTTCCGTTATCAGATTATGAGAAAGAGCTAGAAATAATGCAGACTATGACCAAAGAAGAGTACTTGGCAACTTTAAGGAGGAAGAGTAGTGGCTTCTCAAGAGGTGTATCAAAGTATAGGGGTGTTGCAAGGCATCATCAGAATGGAAGATGGGAAGCAAGGATAGGAAGAGTTTTTGGAAACAAATATCTTTACCTTGGAACCTACAGCACACAAGAGGAAGCAGCACGAGCCTATGACATAGCAGCAATTGAGTACAGAGGAATTAATGCTGTCACCAACTTTGATTTAAGTAATTACATTACATGGTTGAAGCCTTCACACCAAAACTCCCAAGACCCTAAACCTGAAACAGAAGTAGTACTAAACTCTCAAGCACTCACTTCTCCATCCAACTATGCTCCAAATCCAATACAACATTCAAAACCATTGCCCTTTGACAATACCTCTTTCATCAGTCTTGATCACCTGAATTACCCTGAAAATCAAGAAGTCTTTGATAACAAAATGTATCGATTTTCGAGCAGCAAGTCGTCTTCTCCCACGGCTCTTGGCCTTCTCTTTCGCTCTTCGCTGTTTAGGGAATTGGTTGAAAAGAACTCAAACAATGCATGTGGAGATGAACTTGATGAGGAAGTCACAAAAGATCAACAACAAAACGTAGCCAGTGATGATGAACTGGGTGGGATCTTCTGTGATGGCAGTGACAGCATTTCATTTTTCTATGATCCAAACACAAGCGGCTTAGAACTGCAAGAAAGCGATCTCTACTCAATTCTTTGA 957 0.4044 SNRHRWTGRFEAHLWDKLSWNVTQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPLSDYEKELEIMQTMTKEEYLATLRRKSSGFSRGVSKYRGVARHHQNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGINAVTNFDLSNYITWLKPSHQNSQDPKPETEVVLNSQALTSPSNYAPNPIQHSKPLPFDNTSFISLDHLNYPENQEVFDNKMYRFSSSKSSSPTALGLLFRSSLFRELVEKNSNNACGDELDEEVTKDQQQNVASDDELGGIFCDGSDSISFFYDPNTSGLELQESDLYSIL* 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2683 318 CDD AP2 3 62 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 2 307 - -
Amo04g2683 318 SUPERFAMILY DNA-binding domain 3 62 IPR016177 GO:0003677
Amo04g2683 318 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 Pfam AP2 domain 3 52 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 Pfam AP2 domain 95 146 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 ProSiteProfiles AP2/ERF domain profile. 1 60 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 CDD AP2 95 156 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 2 307 - -
Amo04g2683 318 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Amo04g2683 318 SUPERFAMILY DNA-binding domain 95 156 IPR016177 GO:0003677
Amo04g2683 318 Gene3D AP2/ERF domain 2 62 IPR036955 GO:0003700|GO:0006355
Amo04g2683 318 Gene3D AP2/ERF domain 95 156 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2683 Amo-Chr4 100004462 100006303 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2683 3 158 AP2-EREBP Transcription Factor Family AT5G57390 71.069 1.06e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo04g2683 AP2 8.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2683 - - gmx:100779867 457.603