Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2659 ATGGGTGAGAAAGATATTGGTAATGAAGATGTGGGGTTGAGTTTGAGTTTGAGTTTGGGAAGAGGATGTTCTTCATCTCCGCCACCTTTGAAGCCACAAAGATCGGTTCCTATGAATAACATCAACGAGAAGAGTTCATGGAATGAGTTGTTTCAGTTATTACCACAAGTAGATAGGAGCACAGATATGAGGCCGTTATTTGGTGGAGGAATCAACATGAATTCGATGCCGTCAATGGCGGAGACTCCGCCGGATTGCAACCAGGACAACCGTGATTCATCGCCAAACAACAGCAGTTTATCAAGTGGCAGTGGCTGCAAGCGAAGCGAGAGAGAAGAGGACAATGGCACGGCGGTTGCCGGCATCGAATTGGTGTCGTGCTCGCGGGGAAGTGATGACGAGGATGGCGGCGGCGGAGAGGCGGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCAATGTTATTGGAAGAAACGTTCAAGCAGCATAACACGCTGAACCCGAAACAAAAGCAGACATTGGCAAAGGAATTGAATCTGAGAGCCAGACAGGTGGAGGTGTGGTTCCAGAATAGGAGAGCAAGGACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGGACATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGTCCTTCTTGCGAGCGTGTCGCCGTCTCATCCGCCTCGTCCTCTAACTCTGCCGCCGCCTCCACCACTCACGTGCCGGCACTACAAAGTAATTGCAACAACTCGTTGGGTACACACATCCAGCGGCCGGTGCGCGTCAACACTTGGCCATTTGACAGCCGCGTCAACACTTGGCCATTTGACAGCCCAATTTCGCGGCCGTAG 954 0.499 MGEKDIGNEDVGLSLSLSLGRGCSSSPPPLKPQRSVPMNNINEKSSWNELFQLLPQVDRSTDMRPLFGGGINMNSMPSMAETPPDCNQDNRDSSPNNSSLSSGSGCKRSEREEDNGTAVAGIELVSCSRGSDDEDGGGGEAARKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSNSAAASTTHVPALQSNCNNSLGTHIQRPVRVNTWPFDSRVNTWPFDSPISRP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2659 317 Pfam Homeodomain 143 197 IPR001356 GO:0003677
Amo04g2659 317 SUPERFAMILY Homeodomain-like 131 200 IPR009057 -
Amo04g2659 317 SMART halz 199 242 IPR003106 GO:0006355|GO:0043565
Amo04g2659 317 ProSiteProfiles 'Homeobox' domain profile. 139 199 IPR001356 GO:0003677
Amo04g2659 317 MobiDBLite consensus disorder prediction 75 105 - -
Amo04g2659 317 PANTHER - 9 300 - -
Amo04g2659 317 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 300 - -
Amo04g2659 317 MobiDBLite consensus disorder prediction 16 40 - -
Amo04g2659 317 MobiDBLite consensus disorder prediction 65 119 - -
Amo04g2659 317 Coils Coil 205 235 - -
Amo04g2659 317 Gene3D - 137 204 - -
Amo04g2659 317 Pfam HD-ZIP protein N terminus 8 112 IPR006712 GO:0005634
Amo04g2659 317 ProSitePatterns 'Homeobox' domain signature. 174 197 IPR017970 GO:0000981|GO:0006355
Amo04g2659 317 SMART HOX_1 141 203 IPR001356 GO:0003677
Amo04g2659 317 Pfam Homeobox associated leucine zipper 199 232 IPR003106 GO:0006355|GO:0043565
Amo04g2659 317 CDD homeodomain 143 200 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2659 Amo-Chr4 99712054 99715601 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2659 6 299 Homeobox Transcription Factor Family AT5G47370 51.495 1.15e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo04g2659 HD-ZIP_N 5.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2659 K09338 - gmx:100819624 285.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0395 12 6496322 6499767 Amo04g2659 04 99712054 99715601 PCT