Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2613 GGATTCGGTTATGTCCACAAAGGACTCCTTCCAAACGGCAAAGAGGCTGCCATCAAACAGCTCAAGGATGGAAGTAGGCAGGGAGAGCGTGAATTCCAAGCTGAAGTAGACATAATCACTCGGCTTCATCACAGGAATCTCGTTTCTTTGCTTGGATATTGCATCGCCGACCACCATAGACTTCTCGTCTATGAATTTGTTCCAAACAATACATTAGAGTTCCATCTACATGGGCAAGGTCCTACTATAGATTGGCCTACAAGAATGAGGATTGCTCTAGGAGCTGCTAAGGGAATAGCATATCTTCATGAGGAATGTTATCCCAAGATCATCCATCGTGATATCAAAGCTGCTAACATTCTCCTCGATTTTAATTTCCAAGCGAAGGTTGCTGATTTTGGGCTTGCAAAGTTTTGCCCGGATATGAATACGCATGTTTCCACTCGAGTGATGGGAACTCTAGGGTATGTAGCTCCTGAATATGCTTCCAGTGGAAACCTCACCGAAAAGGCCAACGTTTTCTCCTTCGAAGTCATGCTTCTTGAGTTAATTACTGGCCGCCGACCAGTAATTGATTCACATCATACTTTCATGGAGGCAATGCCTTTACTAACAAAGGTTTTGAAAGACAATAATTTTGAAGTTGTAGCTGACCGAAAGCTCCAAAATCAGTATGAACCAACCGAAATGGTTTCCATGCTGGCCTCTGCAGCTGCTTCTATACGATATGAAGCAAAGCTTCGACCAAAAATGAGCCAGATAGTTCGTGCTTTGGAAGGAGATGCATCTCAAGTAGCTGAGTTCACTTCTAATGTATTATGCTTAGAGTCTGAGGCTGCTACATACAGACGAGAAATGATTAAAATCATTTTCGACATGAGTGGATCCACGAGTTAA 897 0.4303 GFGYVHKGLLPNGKEAAIKQLKDGSRQGEREFQAEVDIITRLHHRNLVSLLGYCIADHHRLLVYEFVPNNTLEFHLHGQGPTIDWPTRMRIALGAAKGIAYLHEECYPKIIHRDIKAANILLDFNFQAKVADFGLAKFCPDMNTHVSTRVMGTLGYVAPEYASSGNLTEKANVFSFEVMLLELITGRRPVIDSHHTFMEAMPLLTKVLKDNNFEVVADRKLQNQYEPTEMVSMLASAAASIRYEAKLRPKMSQIVRALEGDASQVAEFTSNVLCLESEAATYRREMIKIIFDMSGSTS* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2613 298 SMART serkin_6 1 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2613 298 PIRSF ILK 11 269 - -
Amo04g2613 298 Pfam Protein tyrosine and serine/threonine kinase 2 258 IPR001245 GO:0004672|GO:0006468
Amo04g2613 298 Gene3D Phosphorylase Kinase; domain 1 1 67 - -
Amo04g2613 298 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 263 - -
Amo04g2613 298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 110 122 IPR008271 GO:0004672|GO:0006468
Amo04g2613 298 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 1 263 - -
Amo04g2613 298 CDD STKc_IRAK 1 260 - -
Amo04g2613 298 Gene3D Transferase(Phosphotransferase) domain 1 68 276 - -
Amo04g2613 298 SUPERFAMILY Protein kinase-like (PK-like) 1 258 IPR011009 -
Amo04g2613 298 ProSiteProfiles Protein kinase domain profile. 1 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2613 Amo-Chr4 99235002 99242802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2613 1 289 Trihelix Transcription Factor Family AT5G38560 54.545 1.18e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo04g2613 PK_Tyr_Ser-Thr 2.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2613 - - ahf:112743291 572.392