Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2603 ATGAAACCTTCCTCTAAACCAACTCAGGTACTGCATTTCCCTCCTCCAAGTTCGACTCCAGCACCATCTTTTTCGTCAAGTGGCGTCATCGTTGGAATGGCGGCAATCGTCACTTTCGCCATTTTGATTGTGGTGCTTAGCGCTTTTGGTATTTCTTATTGGAAGAATAGGAAGAGAAAACATGATAAAGATCTTGGATTTAAAGGGAATAACGGGATAATAGAAATGTCATCAAAGAACAGAATATTCAGATACGAGGAGTTGGAAGTTGCAACAGATGGGTTCTCGAAAGCAAATTTGGTTGGAGAAGGTGGATTCGGTTATGTCCACAAAGGAGTTCTTTCAAACGGCAAGGAGGCTGCCATCAAACAGCTCAAGGATGGAAGTAGGCAGGGAGAGCGTGAATTCCAAGCTGAAGTAGACATAATCACTCGGCTTCATCACAGGAATCTCGTTTCTTTACTTGGATATTGCATCGCTGGCCACCGTAGACTTCTCGTCTACGAATTTGTTCCAAACAATACATTAGAGTTCCATCTACATGGTTATCCCAAGATCATCCATCGTGATATCAAAGCCGCTAACATTCTCCTCGATTTTAATTTCCAAGCGAAGGTTGCTGATTTTGGACTTGCAAAGTTATGCCAGGATATGAATACGCATGTTTCCACTCGAGTGATGGGAACTCTAGGGTATGTAGCTCCTGAATATGCTTCCAGTGGAAATCTCACTGAAAAAGCCGACGTTTTCTCCTTCGGAGTCATGCTTCTTGAGTTAATTACTGGCCGCCGACCAATAATTGATTCACATCATACTTTCGTAGAGTTTGGTGAATTCTCGCAGGCAATGCCTTTGCTAACAAAGGTTTTGAAAGAGAATAATTTTAAAGTTGTAGCTGACCGAAAGCTCCAAAATCAGTATGAAGCAACCGAAATGGTTTCCATGCTGGCCTCTGCAGCTGCTTCTATACGATATGAAGCAAAGCTTCGACCAAAGATGAGCCAGATAGTTCGTGCTTTGGAAGGAGATGCATCTCAAGTAGCTGAGTTCACTTCTAATGTATTATGCTTAGATTCTGAGGCTGTTACGCACAGACAAGAAATGATTAAAATCATTAGTGACATGAGTGGATCCACGAGTTAA 1143 0.4226 MKPSSKPTQVLHFPPPSSTPAPSFSSSGVIVGMAAIVTFAILIVVLSAFGISYWKNRKRKHDKDLGFKGNNGIIEMSSKNRIFRYEELEVATDGFSKANLVGEGGFGYVHKGVLSNGKEAAIKQLKDGSRQGEREFQAEVDIITRLHHRNLVSLLGYCIAGHRRLLVYEFVPNNTLEFHLHGYPKIIHRDIKAANILLDFNFQAKVADFGLAKLCQDMNTHVSTRVMGTLGYVAPEYASSGNLTEKADVFSFGVMLLELITGRRPIIDSHHTFVEFGEFSQAMPLLTKVLKENNFKVVADRKLQNQYEATEMVSMLASAAASIRYEAKLRPKMSQIVRALEGDASQVAEFTSNVLCLDSEAVTHRQEMIKIISDMSGSTS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2603 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 184 345 - -
Amo04g2603 380 SMART serkin_6 95 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2603 380 MobiDBLite consensus disorder prediction 1 22 - -
Amo04g2603 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 184 345 - -
Amo04g2603 380 Gene3D Transferase(Phosphotransferase) domain 1 177 354 - -
Amo04g2603 380 Gene3D Phosphorylase Kinase; domain 1 57 170 - -
Amo04g2603 380 SUPERFAMILY Protein kinase-like (PK-like) 72 340 IPR011009 -
Amo04g2603 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 75 182 - -
Amo04g2603 380 ProSiteProfiles Protein kinase domain profile. 95 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2603 380 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 75 182 - -
Amo04g2603 380 Pfam Protein kinase domain 179 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2603 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Amo04g2603 380 ProSitePatterns Protein kinases ATP-binding region signature. 101 123 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2603 Amo-Chr4 99148857 99153006 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2603 16 371 Trihelix Transcription Factor Family AT5G38560 42.657 9.17e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Amo04g2603 Pkinase 1.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2603 - - aip:107637227 666.381