Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2577 ATGTTCCAAAAAATCAGGGTTATGATGGCATGCAGGGTAACTATATGCATAGTTCTTAGTGTCCTCATAAATATGGCCTCAGCTGCAATTGATGAAAACAGGGAAGCAAATGCACTCTTGAAGTGGAAGGCCACTCTTGACAGCCAAAGCCAAGTTAAGTTGTCATCTTGGAACAACGGCACAAGTCCATGCAGATGGAGAGGAATTCAGTGTGATAAAACAAAGTCAATCACAAGCATGGATATTCAAAATTTTGGACTCAAAGGTACACTCCATACTCTCACCTTCTCTTCATTCCCCAACCTCCTTAGCATAAACATATACAACAACTTGTTCCATGGAACCATTCCCCCACAGATTGCTAACTTGTCCAGAGTTAATCAATTGAACTTGTCCAAAAACTTCTTTGAGGGTTCCATTCCTAAAGAGATCTTCACCTTGACAAGTCTTCGCGGGCTTGATCTTTTCGAATGCCATCTAAGTGGCCAAATCCCTGAGTCTATAGGAAATTTGTCCAACTTAACATATCTAGATTTTGGAAACAACAATCTCTCTGGCCACATTCCTACTGGGATTGGCAAATTGACCAACCTTGAGTATTTTTCTTTTATAAATAATTATCTTTCTGGTTCCATTCCAATGGAAATAGGAATGATGACAAACCTTCAGACGATTGAATTCTCATATAACACTCTCTCTGGTGTTATCCCTTCTACAATTGGTAACTTGAGCAATCTGCAACAAATTTACATTCCTAATAACACACTGTCTGGACCAATCCCACCCTCTATCTGGAACATGTCTACTTTGACCTTGATATGGCTCTTTGGCAATGAACTTTCCGGATCTATCCCAAATTACATAGATAACTTAGCCCCCAATTTGAATTCCCTTTCACTTGAGGGCAACCACCTTTCTGGCTCCATTCCTCCCACACTTGGAAATTTGACAAAGCTCACCGAACTATACCTGAGATTTAACAATTTTTCTGGACCAATTCCTTCCTCTATAGGTAATCTGTTCAATTTGAACTACTTGACTTTCCAATATAATAAACTCAGTGGATCCATTCCTGACACAATTGGAAACTTGAAAAGCCTCTTTTCATTAGAATTGTCCAACAACATGCTTACTGGCTCCATCCCACAGGGCATTAATAACATGACATTGTTGCAAGATTTTTTAGTGGCCCAAAATAATTTCACCGGTCATTTGCCACCTCAAATCTGCTCAGGTGAGTCACTCTTGTACTTTGCTGCTGAGCACAACCGTTTTACCGGTCCAGTTCCAAGAAGCTTGAAGAATTGCTCTAGTATTGTTAGAATCACATTAGAGGGAAACCAGTTGGAAGGTGACATATCGAAAGACTTTGGCATATATCCCAATTTGAAACATATTGATTTGAGTGATAATAAATTTTATGGCCAAATTTCATCAAACTGGGGCAAATGTCATAGTCTTCAGAACTTGATCATATCCAACAATAATGTTTCCAGTGGTATACCACCACAAATTGTGAAGGCTACCAAACTTGGCAGGATTCAACTTTCCTCAAACCGATTGACAGGGAAGATTCCGAAAGAATTAGGGAGAATGAAAAGTTTGCTTGAACTCAAGATCAGTGATAATCTTCTCTCAGGAAACATTCCAACAGAATTAGGATCACTGCAGAATTTGCAAATCTTGCATCTAGCAGGAAATGAGTTGAGTGGTAACATACCAACAGAAGTTGTTGAGTTACCCAACTTGTTGGAATTGAATTTGAGCAACAACAAGCTAGAGGGAGGCATCCCCTCTCACTTTGGTTCATTCCAACCTCTATCTTCTCTTGATCTTAGCAGGAATTTCTTGAATGGAACTATTCCAAATGTGCTTGGACAGTTGACGCACTTGCAGTTGTTGAACCTCTCACACAATAATCTCTCTGGCAATATTCCATCCACTTTTGGTGGCATGTCAACCTTGACATCTGTCAATGTATCATACAACCAGTTAGAAGGGCCACTTCCAGAAAGTAAGGCCTTTCGCACTGCTACAATTGAGTCACTGAAAGGTAACAAAGGCTTGTGTGGTAATGTCACTGGCTTGGTGCAATGCAAAACTAATAGCTATAGCCAAAAGAGTCACAAGGCCATGCAATTAGTATTGTTTCTTATCTTTGGAATACTAGTACTTGTGCTTTGTGTGGTGGGTGTTTTAATGTATATTATTTGTAGAAGTGTGAGAAAGAAAGAAGACTCAGCCAAAGAAATACAATCAGAAGAACACTTTTCCATATGGAGCCATGATGGAAAAATGGCATTTGAAACTATCATTGAAGCTACCAAGAATTTTGATGACAAATATCTCATTGGATTTGGAGGGCAAGGATCTGTTTACAGAGCTGAGTTACCTTCAGGTATGGTTGTTGCTGTGAAGAAAATTCATGCAGAATCAGATCCAGAGGACAAGTCCAATTTGAAATCATTTAAAAGTGAAATTGAAGCACTGACAGAAATCAAGCACCGCAACATCATAAAGCTATATGGATTTTGCCAGCATTCCCGGTTCTCTTTTTTGGTTTATGAATTCCTGGAAGGTGGCAGTTTGGATCAAGTACTAAGCAATGAAGCAGAAGCAAGTGCATTTGATTGGAAGAAGCGAGTGAATGTGGTTAGAGGAGTTGCTAATGCTTTATCATATATCCATCATGATTGCGTGCCCCCTATAGTTCATCGTGACATATCAAGCAAGAATATTCTTTTGGATTCAGAAGATGAAGCTCATGTCTCTGATTTTGGGACAGCTAAGTTTCTAAAGCCAGGTTCAAATTGGACCACACTTGCAGTCACCTATGGCTATGGTGCTCCAGAACTTGCTCAGAGTTTGGAGGTGACTACAAAAAGTGATGTGTATAGCTTTGGAGTGCTTTGTTTCGAAATCCTTGTGGGAAAGCATCCGGCAGATATGATAAATTCATTGTTGTCGCCATCAACAGCATCAATAACATACAATTTGTTGTTGGTTGATGTAATTGATCAAAGGCCTCCCCATCCTGAGAAGTCAGTTGCTGGGGAAATCATGTTAATCACAAAGTGGGCGCTTGAGTGTTTGAGCCAAAGTCCACAATTTCGGCCAAGCATGCATCAAGTGTCTAAAGAACTCATGATGGGAAAATCACCTTTCTCTGATGACCACTTTCCCATGATCAGACTTGGACAACTCAATCAAGAATTATTGGAAGCTCCACTTGTGTGA 3237 0.3985 MFQKIRVMMACRVTICIVLSVLINMASAAIDENREANALLKWKATLDSQSQVKLSSWNNGTSPCRWRGIQCDKTKSITSMDIQNFGLKGTLHTLTFSSFPNLLSINIYNNLFHGTIPPQIANLSRVNQLNLSKNFFEGSIPKEIFTLTSLRGLDLFECHLSGQIPESIGNLSNLTYLDFGNNNLSGHIPTGIGKLTNLEYFSFINNYLSGSIPMEIGMMTNLQTIEFSYNTLSGVIPSTIGNLSNLQQIYIPNNTLSGPIPPSIWNMSTLTLIWLFGNELSGSIPNYIDNLAPNLNSLSLEGNHLSGSIPPTLGNLTKLTELYLRFNNFSGPIPSSIGNLFNLNYLTFQYNKLSGSIPDTIGNLKSLFSLELSNNMLTGSIPQGINNMTLLQDFLVAQNNFTGHLPPQICSGESLLYFAAEHNRFTGPVPRSLKNCSSIVRITLEGNQLEGDISKDFGIYPNLKHIDLSDNKFYGQISSNWGKCHSLQNLIISNNNVSSGIPPQIVKATKLGRIQLSSNRLTGKIPKELGRMKSLLELKISDNLLSGNIPTELGSLQNLQILHLAGNELSGNIPTEVVELPNLLELNLSNNKLEGGIPSHFGSFQPLSSLDLSRNFLNGTIPNVLGQLTHLQLLNLSHNNLSGNIPSTFGGMSTLTSVNVSYNQLEGPLPESKAFRTATIESLKGNKGLCGNVTGLVQCKTNSYSQKSHKAMQLVLFLIFGILVLVLCVVGVLMYIICRSVRKKEDSAKEIQSEEHFSIWSHDGKMAFETIIEATKNFDDKYLIGFGGQGSVYRAELPSGMVVAVKKIHAESDPEDKSNLKSFKSEIEALTEIKHRNIIKLYGFCQHSRFSFLVYEFLEGGSLDQVLSNEAEASAFDWKKRVNVVRGVANALSYIHHDCVPPIVHRDISSKNILLDSEDEAHVSDFGTAKFLKPGSNWTTLAVTYGYGAPELAQSLEVTTKSDVYSFGVLCFEILVGKHPADMINSLLSPSTASITYNLLLVDVIDQRPPHPEKSVAGEIMLITKWALECLSQSPQFRPSMHQVSKELMMGKSPFSDDHFPMIRLGQLNQELLEAPLV* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2577 1078 SUPERFAMILY Protein kinase-like (PK-like) 759 1048 IPR011009 -
Amo04g2577 1078 PANTHER LRR RECEPTOR-LIKE KINASE 160 247 - -
Amo04g2577 1078 PANTHER LRR RECEPTOR-LIKE KINASE 17 177 - -
Amo04g2577 1078 PANTHER LRR RECEPTOR-LIKE KINASE 249 1068 - -
Amo04g2577 1078 Pfam Leucine Rich Repeat 582 604 IPR001611 GO:0005515
Amo04g2577 1078 SMART LRR_typ_2 364 388 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 123 147 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 580 603 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 219 242 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 532 556 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 628 651 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 316 340 IPR003591 -
Amo04g2577 1078 SMART LRR_typ_2 171 195 IPR003591 -
Amo04g2577 1078 SUPERFAMILY L domain-like 355 452 - -
Amo04g2577 1078 PRINTS Leucine-rich repeat signature 628 641 - -
Amo04g2577 1078 PRINTS Leucine-rich repeat signature 607 620 - -
Amo04g2577 1078 Pfam Leucine rich repeat N-terminal domain 33 72 IPR013210 -
Amo04g2577 1078 Gene3D Ribonuclease Inhibitor 242 413 IPR032675 -
Amo04g2577 1078 Pfam Protein kinase domain 780 1046 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2577 1078 Gene3D Transferase(Phosphotransferase) domain 1 858 1058 - -
Amo04g2577 1078 SUPERFAMILY RNI-like 236 665 - -
Amo04g2577 1078 Gene3D Ribonuclease Inhibitor 189 241 IPR032675 -
Amo04g2577 1078 Pfam Leucine rich repeat 607 665 IPR001611 GO:0005515
Amo04g2577 1078 Pfam Leucine rich repeat 318 377 IPR001611 GO:0005515
Amo04g2577 1078 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 160 247 - -
Amo04g2577 1078 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 17 177 - -
Amo04g2577 1078 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 249 1068 - -
Amo04g2577 1078 ProSitePatterns Tyrosine protein kinases specific active-site signature. 903 915 IPR008266 GO:0004672|GO:0006468
Amo04g2577 1078 ProSiteProfiles Protein kinase domain profile. 778 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2577 1078 Gene3D Phosphorylase Kinase; domain 1 738 857 - -
Amo04g2577 1078 Gene3D Ribonuclease Inhibitor 32 188 IPR032675 -
Amo04g2577 1078 SMART LRR_sd22_2 556 575 - -
Amo04g2577 1078 SMART LRR_sd22_2 316 342 - -
Amo04g2577 1078 SMART LRR_sd22_2 219 245 - -
Amo04g2577 1078 SMART LRR_sd22_2 171 203 - -
Amo04g2577 1078 SMART LRR_sd22_2 364 387 - -
Amo04g2577 1078 Gene3D Ribonuclease Inhibitor 414 708 IPR032675 -
Amo04g2577 1078 SUPERFAMILY L domain-like 35 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2577 Amo-Chr4 98800280 98803595 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2577 9 950 Receptor kinase-like Gene Family AT4G08850 43.274 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo04g2577 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2577 - - aip:107635237 1373.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3619 14 140665312 140668846 Amo04g2577 04 98800280 98803595 hybridization