Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2575 ATGTCGAGAAAAAATCTCTTAATATTCCTCTTCTATGTCATTGTGAAACTCTCTTGTGTGGCTTTAGCTGCCATTGATGAGAAGAATGAAGAAGCAAATGCACTCTTAAAGTGGAAGGCCACCCTTGATAACAAAAGCCAACTTATCTTGGCATCTTGGAACAACGGGACAAGTCCATGCAGATGGAAAGGAATTCAGTGTGGCAAATCAAAGTCAATCACAAGCATGAACATTGAAAATTTTGGACTCGAAGGTACACTCCACACTCTCAGCTTCTCTTCATTCCCAAACCTCCTCAGCATAAACATATACAACAACTTGTTCCATGGAACCATTCCCCCGCAGATTGGTAACTTGTCAAGAGTTAATCAATTGAACTTGTCCAAAAATTTCTTTGAAGGTTCCATTCCTAAAGAGATCTTCACCTTGACAAGTCTCCACGGGCTTGATCTTTTTGAGTGCCATCTAAGTGGTCAAATCCCTGAGTCTATAGGGAATTTGGCCAACTTAACATATCTAGATTTTGGAAACAACAATCTTTCTGGCCACATTCCTACTGGGATTGGCAAATTGGACAACCTTGAGTATCTTTCTTTCATAGATAATTATCATCTTTCTGGTTCCATTCCAATGGAAATAGGAATGATGACAAACCTTCATACGATTGATTTCTCAAGCAACACTCTCTCTGGGGCTATCCCTCCTACCATTGGTAACTTGAGCAATTTGCAACAATTATACCTTTCTAATAACACACTCTCTGGGTCAATCCACCCTCCATCTGGAACATGTCTAATTACCTTGTTATATCTTAATAGCAATAACCTTTCTGGATCCATCCCTGCTTCCATAGAAAACTTAGCTAACTTAGATTCCCTTGCACTTGATAAGAATCACTTTTCTGGATCCATTCCTTCCACATTGGGAAACTTGACAAAGCTCTTCGAATTATACCTCGGCTTTAATAATTTTTCTGGACCTATTCCTGCCTCTATAGGTAATCTGGTCAATTTGAATTACTTGAGCTTCCATACAAACAACTTCTCTGGAACTGTCCCTGAAACAATTGGAAACTTGAAAGGCCTCAATATGCTAGAATTGGCCACCAACAAGTTTAATGGCACCCTTCCACAGGGCATTAATAACTTGACAAGTTTGAAGACCCTTTCCGTGTCCAATAACAATTTCATTGGCCATTTGCCAACTCAAATCTGCTCAGGTGGATTACTCTCATACTTCAACGCTGAGAACAACCATTTTACTGGATCAGTGCCAAGAAGCTTGAAGAGTTGTTCTAACATTGCTAGACTCACATTACAGGGAAACCAGTTGGAAGGTGACATTGCAGAAATTTTCGGCATATATCCGAATTCAGTACATATTGATCTGAGTGATAACAAGTTTTATGGTCAGATTTCACCAAACTGGGGAAAGAGCCATAACCTTCAGAACTTGTACATGTCCAACAACAATATTTCTGGTGCTATACCACCACAAATTGTTGAGGCTACTAATCTGGGTAGGCTTCGCCTTTCTTCAAACCAACTGAATGGAAAGATTCCAAAGGAACTAGGGAATATGAAAAACTTGTTTGAACTCAGTATCAGTAACAATCATCTCTCAGGAAACATTCCACCAGAAATAGGATCATTGAAGAATCTGACAGTCTTGCACCTAGCAGGAAATGAGTTTAGCGGCAACATACCAAGAGAAGTTATGCAGTTACCCAACTTGGTTGAATTGAACTTGAGCATCAACAGACTAGAGGGAAGCATCCCCTCTGGCATTGCCTCATTGACACCTCTCTCTTCTCTTGATCTTAGCAACAATTTGTTGAATGGAACAATACCAAGGTGGCTTGGAGATCTGACGCAATTGAACTTCTTGAACCTCTCACACAATGATCTCTCTGGCAATATTCCCTCCAGTTTTGATGGCATGTCAGCCTTGATTTCTGTCAACATATCACACAACCAGTTAGAAGGGCCTCTTCCAAACAACCAAGCTTTTCTTAATGCTTCAATTTGGTCCTTGGAAAGTAACAGAGGCTTGTGTGCTAACAATGTCACCGGCTTGGAGCGATGCACAAAGAAGCATAGCCAGAAGATGGTATTGTCTCTTATCTTTGGAGCACTTGCTCTAGCACTTTGTGTGGTAGGTGTTTCAATGTATATTCTTTGCAGAAGAGGCAGAAAGAGAGAAGATGAAGTTAAAGAAGTGCAAGCAGAAGAGCACTTTTGCATATGGAGCCATGATGGGAAAATGGCATTTGAAACAATCATTCAAGCTACCAATAATTTTGATGACAAATATCTCATTGGAAATGGAGGGCAAGGATCTATTTACAAGGCTGAGTTGCCTTCAGGTATGGTTGTTGCTGTGAAGAAGCTTCATGAGAAGACTGCTATTGGGGAGGAGACATACAATTTGAAAGCATTTGAGAATGAAATCAAAGCATTGACAGAAATGAAGCACCGCAACATGATAAAGCTATATGGGTTTTGTCAACATTCACGGTTCTCATTTTTGGTTTACAAGTACTTGGAAGGTGGAAGCTTGGATCAAGTGCTAAGAGATGAAGCGGAAGCAAGTAAATTTGATTGGGGAAAGAGGGTGAATGCAATTAAAGGAGTTGCTAATGCTCTATCATATATGCATCATGATTGCATACCTCCTATAGTTCATCGCGACATATCGAGCAAGAATGTCCTTTTGGATTCAGAATATGAAGCTCATGTCTCTGATTTTGGGACAGCTAAGTTTCTTATGCCTGATTCAAGTTGGACAACACTTGTAGTCACCTATGGATACGGAGCTCCTGAGCTAGCTCAGACTATGGAAGTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTGCTTTGTTTGGAGATCCTCATGGGAAAGCATCCAGGAGATTTGATCAACTCATTGTTGTCGCCAACAACAGCATCAATAACATACAATTTGTTATTGGTTGATGTCATGGATCAGAGGCCACCCCATCCTAAGAATTCAATTGTTGAGGAAATCATGTGGATCACAAAGTGGGCACTTGAGTGCTTGAGACAAAGTCCACGATCACGACCAAGCATGCATCAGATTTCTAAAGAGCTTATGATAGGAAAGTCACCTTTAGCTAATCGCCAGTTTCCTATGATCAGAATTGGGCAACTCATTGAAGAAGGATCGGGGAGTGCACTTACGTGA 3207 0.4054 MSRKNLLIFLFYVIVKLSCVALAAIDEKNEEANALLKWKATLDNKSQLILASWNNGTSPCRWKGIQCGKSKSITSMNIENFGLEGTLHTLSFSSFPNLLSINIYNNLFHGTIPPQIGNLSRVNQLNLSKNFFEGSIPKEIFTLTSLHGLDLFECHLSGQIPESIGNLANLTYLDFGNNNLSGHIPTGIGKLDNLEYLSFIDNYHLSGSIPMEIGMMTNLHTIDFSSNTLSGAIPPTIGNLSNLQQLYLSNNTLSGSIHPPSGTCLITLLYLNSNNLSGSIPASIENLANLDSLALDKNHFSGSIPSTLGNLTKLFELYLGFNNFSGPIPASIGNLVNLNYLSFHTNNFSGTVPETIGNLKGLNMLELATNKFNGTLPQGINNLTSLKTLSVSNNNFIGHLPTQICSGGLLSYFNAENNHFTGSVPRSLKSCSNIARLTLQGNQLEGDIAEIFGIYPNSVHIDLSDNKFYGQISPNWGKSHNLQNLYMSNNNISGAIPPQIVEATNLGRLRLSSNQLNGKIPKELGNMKNLFELSISNNHLSGNIPPEIGSLKNLTVLHLAGNEFSGNIPREVMQLPNLVELNLSINRLEGSIPSGIASLTPLSSLDLSNNLLNGTIPRWLGDLTQLNFLNLSHNDLSGNIPSSFDGMSALISVNISHNQLEGPLPNNQAFLNASIWSLESNRGLCANNVTGLERCTKKHSQKMVLSLIFGALALALCVVGVSMYILCRRGRKREDEVKEVQAEEHFCIWSHDGKMAFETIIQATNNFDDKYLIGNGGQGSIYKAELPSGMVVAVKKLHEKTAIGEETYNLKAFENEIKALTEMKHRNMIKLYGFCQHSRFSFLVYKYLEGGSLDQVLRDEAEASKFDWGKRVNAIKGVANALSYMHHDCIPPIVHRDISSKNVLLDSEYEAHVSDFGTAKFLMPDSSWTTLVVTYGYGAPELAQTMEVTEKSDVYSFGVLCLEILMGKHPGDLINSLLSPTTASITYNLLLVDVMDQRPPHPKNSIVEEIMWITKWALECLRQSPRSRPSMHQISKELMIGKSPLANRQFPMIRIGQLIEEGSGSALT* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2575 1068 SMART LRR_typ_2 240 264 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 311 335 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 623 646 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 575 599 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 287 310 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 167 191 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 527 551 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 119 143 IPR003591 -
Amo04g2575 1068 SMART LRR_typ_2 383 407 IPR003591 -
Amo04g2575 1068 Pfam Protein kinase domain 769 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2575 1068 SUPERFAMILY Outer arm dynein light chain 1 325 473 - -
Amo04g2575 1068 SUPERFAMILY RNI-like 75 350 - -
Amo04g2575 1068 Gene3D Ribonuclease Inhibitor 185 263 IPR032675 -
Amo04g2575 1068 Gene3D Ribonuclease Inhibitor 27 184 IPR032675 -
Amo04g2575 1068 SUPERFAMILY Protein kinase-like (PK-like) 753 1038 IPR011009 -
Amo04g2575 1068 PANTHER LRR RECEPTOR-LIKE KINASE 266 1058 - -
Amo04g2575 1068 PANTHER LRR RECEPTOR-LIKE KINASE 12 172 - -
Amo04g2575 1068 SUPERFAMILY L domain-like 451 686 - -
Amo04g2575 1068 PANTHER LRR RECEPTOR-LIKE KINASE 156 258 - -
Amo04g2575 1068 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 266 1058 - -
Amo04g2575 1068 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 12 172 - -
Amo04g2575 1068 ProSiteProfiles Protein kinase domain profile. 767 1040 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2575 1068 Pfam Leucine rich repeat 576 636 IPR001611 GO:0005515
Amo04g2575 1068 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 156 258 - -
Amo04g2575 1068 Gene3D Phosphorylase Kinase; domain 1 728 847 - -
Amo04g2575 1068 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Amo04g2575 1068 PRINTS Leucine-rich repeat signature 623 636 - -
Amo04g2575 1068 PRINTS Leucine-rich repeat signature 602 615 - -
Amo04g2575 1068 ProSitePatterns Tyrosine protein kinases specific active-site signature. 893 905 IPR008266 GO:0004672|GO:0006468
Amo04g2575 1068 Gene3D Ribonuclease Inhibitor 408 698 IPR032675 -
Amo04g2575 1068 Gene3D Ribonuclease Inhibitor 264 407 IPR032675 -
Amo04g2575 1068 Gene3D Transferase(Phosphotransferase) domain 1 848 1047 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2575 Amo-Chr4 98774195 98777487 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2575 4 940 Receptor kinase-like Gene Family AT4G08850 44.142 0.0 726
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo04g2575 Pkinase 2.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2575 - - gmx:100815688 1303.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3623 14 140735409 140738724 Amo04g2575 04 98774195 98777487 hybridization