Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2568 ATGTATCCAAAGATTGAAGGTAGCACATACAGCAGGGGCATTATGCTCATGTACCTGTGTGTCCATGTTGTTGCTGCTGCTTCAAGTGAGAAGAGTGAAGCAAGTGCACTCTTAAAGTGGAAGGCCAGCCTTGAGAACACCAGTGTGTTGTCGTCGTGGGCAGGTACGAATCCATGCAAATGGCACGGCATTGCATGCGACAGAGCCAATTCCGTTACGGCAATAAATCTTGAAAATCATAATCTGAAAGGTACACTCCACACTCTCAGCTTCTCATCATTCCCCAACCTCCTCACCTTTAATATCTACAACAACTTCTTCTATGGAACCATACCACCACACATTGGTAACATATCCAAACTCAATACTTTGAACTTGTCTTTGAACGCTTTTGAGGGTACCATCCCTAAGGAGATGTGGACATTGACGAGTTTACGCGGGCTTGATCTTTCCCTGTGTATTTATCTTAGTGGAGTCATACCCAGTTCCATAGCAAATTTGACCAACCTATCATACCTAGATGTAGCCAAGAACAATCTTTCTGGCCACATTCCTCCTGAGATTGGAAATTTGAACAGCCTCAAGTATCTTGATCTGGCAGGTAATAAGCTTAGTGGTTCCATTCCCCACGAAATTGGAATGTTGACAAAGCTTGAGGTACTTGTTTTATCCACAAACATTCTCTTTGGAACTATCCCTTCTACCATTGGTAACCTTAGCAATCTGATTCACTTTTTTGTTTCAAATAACTCCCTCTCTGGCCCAATCCCATCCCTCATATGGAACATGTCTAACTTGTCCTGGCTATACCTTGATGGCAATCGACTATCTGGATCAATCCCTCCTTCCATAGAAAACTTGGCCAATTTGGAACGCTTTGTACTTCATGGAAACAATCTTTCTGGGTCCATTCCTTCCACTGTTGGAAACATGACTAAGCTCATCTACTTGTTCATGCGCGTCAATCATTTTTCTGGATCAATTCCTGTCTCCATAGGTAATTTGATCAACTTGAAAAAACTTAGTCTCCAAGAAAACAATTTCGTCGGATTTATTCCCAACACAATTGGAAACTTAAAGAAGCTCTCGCTGCTTGAATTGTCTTTCAACAATCTTAAAGGTAGCATTCCACCATCCATAAGAAACATGACCAACCTCATGATCTTTTTAGTATCTGAAAATAATTTAACTGGAAATTTGCCACCCCAAATCTGCTCAGGGGGATCACTAGAGTCATTTTGTGCTGATAATAATCACTTTACCGGTCCAGTACCAAGAAGCTTGAAGAATTGCTCTAGTATTCAAAGAATCAGGCTACAAGGTAACCAATTGGAAGGAGATATAGCACAAGATTTTGGCATATATCCAAATTTGGGATTTATTGATCTAAGTGACAATAAATTTCATGGCCAAATTTCTCCTAACTGGGGGAGGTGCCCAAATCTTGATACCTTGATCATATCCAACAATAATATTTCCGGTAGTATACCCCCACAAATTGCAGAGGCTACTAAACTGGGTAAGCTTCAACTTTCTTCAAACCAATTGACTGGAAGGATACCAAAAGAACTAGGGAATTTGAAGAGCCTGCTTCATCTCAATATAGGCAACAATCAACTTGTAGGAAACATTCCAAAACAAGTTGTAGGGTTGCCTAATTTGTTGGAATTGAACTTGAGCAACAACAGACTAGATGGAAGCATCCCCTCTGAGTTTGATCCAATTCAACCTCTTTATTCTCTTGATCTTAGCGGGAATCAGCTAGCTCAGACTATGGAAGTGACAGAGAAATGTGATGTATACAGCTTTGGAGTGCTTTGTTTGGAAATTCTTGTGGGAAAGCATCCAGCGGACCTAATAAGTTCATTGTTGTCACCATCAACAGCGAGAATAACATACGATTTGTTATTGGTTGATGTCATAGATCAGAGACCTCCCCTTCCTGAAATATCAATTGTTGGGGAAATAATGTGGATCACAAAGTGGGCACTTGAATGCTTGAGCCAAAGTCCACAATCTCGACCAAGCATGCATCAAGTTTCTAAAGAGCTTATGATGGGAAAACCACGTTTCCCGGATGACCAATTTGCTATGATCAGAATTGGACAACTCAATGAAGAATGGGAAACTCCACTTATGTGA 2142 0.408 MYPKIEGSTYSRGIMLMYLCVHVVAAASSEKSEASALLKWKASLENTSVLSSWAGTNPCKWHGIACDRANSVTAINLENHNLKGTLHTLSFSSFPNLLTFNIYNNFFYGTIPPHIGNISKLNTLNLSLNAFEGTIPKEMWTLTSLRGLDLSLCIYLSGVIPSSIANLTNLSYLDVAKNNLSGHIPPEIGNLNSLKYLDLAGNKLSGSIPHEIGMLTKLEVLVLSTNILFGTIPSTIGNLSNLIHFFVSNNSLSGPIPSLIWNMSNLSWLYLDGNRLSGSIPPSIENLANLERFVLHGNNLSGSIPSTVGNMTKLIYLFMRVNHFSGSIPVSIGNLINLKKLSLQENNFVGFIPNTIGNLKKLSLLELSFNNLKGSIPPSIRNMTNLMIFLVSENNLTGNLPPQICSGGSLESFCADNNHFTGPVPRSLKNCSSIQRIRLQGNQLEGDIAQDFGIYPNLGFIDLSDNKFHGQISPNWGRCPNLDTLIISNNNISGSIPPQIAEATKLGKLQLSSNQLTGRIPKELGNLKSLLHLNIGNNQLVGNIPKQVVGLPNLLELNLSNNRLDGSIPSEFDPIQPLYSLDLSGNQLAQTMEVTEKCDVYSFGVLCLEILVGKHPADLISSLLSPSTARITYDLLLVDVIDQRPPLPEISIVGEIMWITKWALECLSQSPQSRPSMHQVSKELMMGKPRFPDDQFAMIRIGQLNEEWETPLM* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2568 713 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 533 588 - -
Amo04g2568 713 SUPERFAMILY RNI-like 75 382 - -
Amo04g2568 713 SMART LRR_sd22_2 263 289 - -
Amo04g2568 713 SMART LRR_sd22_2 359 385 - -
Amo04g2568 713 SMART LRR_sd22_2 167 193 - -
Amo04g2568 713 SMART LRR_sd22_2 215 241 - -
Amo04g2568 713 PRINTS Leucine-rich repeat signature 194 207 - -
Amo04g2568 713 PRINTS Leucine-rich repeat signature 551 564 - -
Amo04g2568 713 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 155 242 - -
Amo04g2568 713 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 588 704 - -
Amo04g2568 713 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 246 546 - -
Amo04g2568 713 PANTHER LRR RECEPTOR-LIKE KINASE 533 588 - -
Amo04g2568 713 SUPERFAMILY Protein kinase-like (PK-like) 590 689 IPR011009 -
Amo04g2568 713 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 14 170 - -
Amo04g2568 713 ProSiteProfiles Leucine-rich repeat profile. 193 215 IPR001611 GO:0005515
Amo04g2568 713 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Amo04g2568 713 Gene3D Transferase(Phosphotransferase) domain 1 591 690 - -
Amo04g2568 713 SUPERFAMILY L domain-like 295 590 - -
Amo04g2568 713 PANTHER LRR RECEPTOR-LIKE KINASE 588 704 - -
Amo04g2568 713 PANTHER LRR RECEPTOR-LIKE KINASE 246 546 - -
Amo04g2568 713 PANTHER LRR RECEPTOR-LIKE KINASE 14 170 - -
Amo04g2568 713 Gene3D Ribonuclease Inhibitor 391 497 IPR032675 -
Amo04g2568 713 Gene3D Ribonuclease Inhibitor 30 182 IPR032675 -
Amo04g2568 713 Gene3D Ribonuclease Inhibitor 498 590 IPR032675 -
Amo04g2568 713 Pfam Leucine rich repeat 217 276 IPR001611 GO:0005515
Amo04g2568 713 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515
Amo04g2568 713 Pfam Leucine rich repeat 156 204 IPR001611 GO:0005515
Amo04g2568 713 Pfam Leucine rich repeat 549 588 IPR001611 GO:0005515
Amo04g2568 713 Gene3D Ribonuclease Inhibitor 280 379 IPR032675 -
Amo04g2568 713 Gene3D Ribonuclease Inhibitor 183 279 IPR032675 -
Amo04g2568 713 PANTHER LRR RECEPTOR-LIKE KINASE 155 242 - -
Amo04g2568 713 SMART LRR_typ_2 359 382 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 167 190 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 263 286 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 383 407 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 551 574 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 191 215 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 335 358 IPR003591 -
Amo04g2568 713 SMART LRR_typ_2 287 311 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2568 Amo-Chr4 98697961 98701507 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2568 14 592 Receptor kinase-like Gene Family AT4G08850 40.956 2.66e-133 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo04g2568 LRR_8 1.3e-06 CL0022
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2568 - - aip:107635237 1123.23