Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2564 ATGTTCATCACATTCATCATGTGTATGATTCTAACACTCCCTTCAACCCAAGTTGTTGGAGATAATGAAGATAATGAAGCAAATGCTCTCCTGAAATGGAGATCTACCCTTGACAACCATAGTCAAAGTCTTCTATCATCTTGGAACAGCACCACTAGTCCATGCAAATTTGAAGGAATTCAATGTGATAATAATAAGTCAAACTCTGTCTCCACCATAATTCTTCCAAATTATGGACTTGAAGGTACACTCCATGGACTAAACTTTTCTTCATTTCCCAACCTTGTTAGCATAGACATTAACAACAATTCCTTCTATGGTACCATTCCTCCACAAATTGGTAACTTGTCTAGAATTACCAATTTGAACATGTCTTATAATCAATTCATAGGTTCAATTCCTAATGAAATGTGGACACTAAGGTCATTACATAAGCTTGATCTTTCTAACTGCCTTCTCAATGGTAGCATATCTGCTAATATAGCAAACTTGACCAATTTGTCACACCTAGATTTAGGAGGAAATAATTTAGAAGGCAAAATTCCCCAAGAAATTGGGATGTTGAGGAACTTAGAGTATCTAGGAATTGCAGAAAATTCTCTTGTGACAGGATCAATTCCAAAGGAGATTGGAATGTTAACAAACCTGAGGTTCCTTGATTTCTCATATTGTCCTTTCTCTGGCACTATCCCTTCAGAAATTGGAAAATTGACCCATTTGACTTTTCTTCAATTCATTCAAAACAACCTCTTTGGTCCAATTCCACCTTCCATTTGGAACTTGACTAACTTGACTAAACTTTTACTTTCCACCAATAATTTTTCTGGTCCAATCCCAAGTTCAGTTGGGAAATTGGTTAATCTTGAAATGCTTGATCTGTCTCAAACTCAAATGTCTGGTCCTATTCCTGATTCTATTGGAAACTTGACAAAGCTCACCACATTGTACTTGTACCAAAGCAAATTCTCAGGAGAAATTCCTTCAACTATAGGAAACTTGGTCAATTTGAATGTTCTTGTCCTTGCAGAGAACAATTTCTCTGGTCCTATTCCTTCAACTTTAGGTAACTTAGTTAGGCTCACTGATCTTCAATTGGCCACAAACAAGTTCAATGGTAGCATTCCAGAGGAAATGAATAATGTCATAAACTTGGGAAATTTGCAGCTATCTGAGAACAATTTTATTGGTAGTTTGCCATCCCAAATATGCTTAGGTGGTGCATTAACCAACTTCAGTGCTGATCATAACAATTTCACTGGTCCAGTACCAAGAACCTTGAAGAATTGCTCTAGTATCCTTAGAATAAGGCTTGATTCAAACCACATTGAAGGTAACATAACAGAAGATTTTGGTGTATATCCAAATTTGGACTACATCAATCTCAGTGGCAACAAGTTTTATGGCCACATTTCTCCAAACTGGGGAAAATGTCCTAAACTTACTAGTCTTATAATTGGAAGCAACAATGTATGCTCGATCTTTCGTCGAATCAGTTGGTTGGAAAAGTTCCCAAGGAACTTGGCAAGTTTGAAGAAACTAGTCCAAGTCAAAATTGGCAACAACCTTCTTTCAGGAAACATTCCAACAGAAATTGGACAGCTTCAGAGTCTTGAGATCTTGAATCTTGGAGGAAACAAGTTGAATGGCGCTATACCAAAAGCAGTTGTGGAGTTACAGAAGCTAAGGGAGCTGAATTTGAGCAAGAACAAGCTTGGTGGAAGCATTCCCTCTGTGTTTGGCCAATCAATGGTATCTCTAGATCTCAGTGGAAATTCATTGGATGGAACAATACCAACAAGCCTTGGAGGGTTGCAACACTTGCAAGTGTTGGATTTGTCACATAACAATCTTTCAGGTACTATTCCATCAAAATTTAGCCTTACATTGGAATTTGTGAACATGTCAGATAACCAGCTAGAAGGGCCAATTCCAAATTTTCCTGCTTTTCTCAATGCTAGTTCATTCAAGAACAACAAAGGTTTGTGTGGGAATATCAAAGGATTGGTTCAATGCTCAACCAACCTCAAAAAGAGCAGCAAAAAACACATCTTATTGTTGGTATTAATCATTACTTTGGTGAGTCTAGCAATGGTTCTTTGTGGGGTTGGAATTGCAATGTACTTTCTTTGCAGAAGTAAAAGGAAATTGAGAAACCAAAGTGAAGTCCAAGCCAAAGAAGGAAGAGTTGAACCACACTTTACAATATGGAGCTATGATGGGAAAATCATGTTTGAGAACATCATTGATGCTACTAAGAATTTTAATGATTACTATCTCACTGGTGTTGGAAGCCAAGGACATGTTTACAAAGCTGAATTGCCTTCAGGACAAGTTGTTGCTGTGAAGAAGCTTCATAATGTGGTAGTAACTGATGGAGAAGTTTCAACAACAAAGGCTTTTACAACTGAAGTTCAAGCATTGACACAGATAAAGCACAGGAACATCATAAAGCTCTATGGATTCTGTTCACATTCACAGTTCTCATTTCTTGTTTATGAGTTCTTGGATGGTGGAAGCTTGGATCAAATACTGAGCAATGAGACACATGCTGCTGAATTTGATTGGGAGAAGAGGGTGAATGTTGTTAAGGGCGTCGCGAATGCTTTGTCTTACATGCATCATGATTGTTCGCCTTCTATAATTCATCGCGATATTTCAAGCAAGAATGTTCTGTTGGATTCAGAGTATGAAGCTCACGTTTCAGATTTTGGGACTGCTAAGTTTCTCAAGCCTGGTTCATATTGTTGGACAACATTTGCTGGTACTTTTGGCTATGCTGCTCCAGAACTTGCACAAACTATGGAAGTGGATGAGAAATGTGATGTGTATAGTTTTGGAGTACTAGCTTTGGAGATTATCATGGGAAAGCACCCTGGAGATCTCATTTCATCATTAATGTCAACATCAACAGCATCAATGGTCAATGATTTGTTACTAATTGATATCTTAGATCAAAGGCTTCCTGAACCCAATACCAAGAGTCCAATTGTTGAGGAGGTGATCTTGGTTGCAAGTTTGGCATTTTCTTGCTTGACAACAAGCCCACGTTCTCGCCCAACAATGGATCAAGTTTCTAAGGCCCTTGTAATAGGAAGATCAACTTTGGTGGACCAATTTCCAATGATCAGAGTTGGACAACTACACTGA 3147 0.3816 MFITFIMCMILTLPSTQVVGDNEDNEANALLKWRSTLDNHSQSLLSSWNSTTSPCKFEGIQCDNNKSNSVSTIILPNYGLEGTLHGLNFSSFPNLVSIDINNNSFYGTIPPQIGNLSRITNLNMSYNQFIGSIPNEMWTLRSLHKLDLSNCLLNGSISANIANLTNLSHLDLGGNNLEGKIPQEIGMLRNLEYLGIAENSLVTGSIPKEIGMLTNLRFLDFSYCPFSGTIPSEIGKLTHLTFLQFIQNNLFGPIPPSIWNLTNLTKLLLSTNNFSGPIPSSVGKLVNLEMLDLSQTQMSGPIPDSIGNLTKLTTLYLYQSKFSGEIPSTIGNLVNLNVLVLAENNFSGPIPSTLGNLVRLTDLQLATNKFNGSIPEEMNNVINLGNLQLSENNFIGSLPSQICLGGALTNFSADHNNFTGPVPRTLKNCSSILRIRLDSNHIEGNITEDFGVYPNLDYINLSGNKFYGHISPNWGKCPKLTSLIIGSNNVCSIFRRISWLEKFPRNLASLKKLVQVKIGNNLLSGNIPTEIGQLQSLEILNLGGNKLNGAIPKAVVELQKLRELNLSKNKLGGSIPSVFGQSMVSLDLSGNSLDGTIPTSLGGLQHLQVLDLSHNNLSGTIPSKFSLTLEFVNMSDNQLEGPIPNFPAFLNASSFKNNKGLCGNIKGLVQCSTNLKKSSKKHILLLVLIITLVSLAMVLCGVGIAMYFLCRSKRKLRNQSEVQAKEGRVEPHFTIWSYDGKIMFENIIDATKNFNDYYLTGVGSQGHVYKAELPSGQVVAVKKLHNVVVTDGEVSTTKAFTTEVQALTQIKHRNIIKLYGFCSHSQFSFLVYEFLDGGSLDQILSNETHAAEFDWEKRVNVVKGVANALSYMHHDCSPSIIHRDISSKNVLLDSEYEAHVSDFGTAKFLKPGSYCWTTFAGTFGYAAPELAQTMEVDEKCDVYSFGVLALEIIMGKHPGDLISSLMSTSTASMVNDLLLIDILDQRLPEPNTKSPIVEEVILVASLAFSCLTTSPRSRPTMDQVSKALVIGRSTLVDQFPMIRVGQLH* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2564 1048 SUPERFAMILY L domain-like 47 304 - -
Amo04g2564 1048 Gene3D Ribonuclease Inhibitor 23 180 IPR032675 -
Amo04g2564 1048 Gene3D Ribonuclease Inhibitor 181 278 IPR032675 -
Amo04g2564 1048 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515
Amo04g2564 1048 Pfam Leucine Rich Repeat 215 237 IPR001611 GO:0005515
Amo04g2564 1048 SUPERFAMILY Protein kinase-like (PK-like) 735 1028 IPR011009 -
Amo04g2564 1048 Pfam Leucine rich repeat 513 571 IPR001611 GO:0005515
Amo04g2564 1048 Pfam Leucine rich repeat 583 639 IPR001611 GO:0005515
Amo04g2564 1048 Gene3D Ribonuclease Inhibitor 279 381 IPR032675 -
Amo04g2564 1048 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
Amo04g2564 1048 ProSitePatterns Tyrosine protein kinases specific active-site signature. 880 892 IPR008266 GO:0004672|GO:0006468
Amo04g2564 1048 ProSiteProfiles Protein kinase domain profile. 754 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2564 1048 Pfam Protein kinase domain 760 1026 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2564 1048 PRINTS Leucine-rich repeat signature 583 596 - -
Amo04g2564 1048 PRINTS Leucine-rich repeat signature 604 617 - -
Amo04g2564 1048 SUPERFAMILY RNI-like 408 648 - -
Amo04g2564 1048 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 244 1047 - -
Amo04g2564 1048 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 9 169 - -
Amo04g2564 1048 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 166 241 - -
Amo04g2564 1048 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Amo04g2564 1048 Gene3D Phosphorylase Kinase; domain 1 714 834 - -
Amo04g2564 1048 Gene3D Transferase(Phosphotransferase) domain 1 835 1035 - -
Amo04g2564 1048 Gene3D Ribonuclease Inhibitor 382 674 IPR032675 -
Amo04g2564 1048 SUPERFAMILY L domain-like 248 491 - -
Amo04g2564 1048 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 244 1047 - -
Amo04g2564 1048 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 169 - -
Amo04g2564 1048 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 166 241 - -
Amo04g2564 1048 SMART LRR_typ_2 333 357 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 213 237 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 604 627 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 261 285 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 92 116 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 558 582 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 381 405 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 534 557 IPR003591 -
Amo04g2564 1048 SMART LRR_typ_2 164 188 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2564 Amo-Chr4 98657758 98661396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2564 26 928 Receptor kinase-like Gene Family AT4G08850 41.515 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Amo04g2564 Pkinase 3.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2564 - - gmx:100814634 1179.08