Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2559 ATGCAAGGAGGAGAGAGAAGTGGTGTTCCCAATTATGAGCTTCAAGTTCCATTCACCAACATCACCACACCTTCACAAGCCATAATCCATGAAATGAACTTTGTTCAGTTTGAAGAAAACCACCTTCTTGGCTTCTTGTCACCTACTTCATCACAATCTCAATCTTCTCAACTCTCTCAATCCTTAGATGCTGCCACCATCCTTGCCACCACAACTACGCCCGCCACAATTGCAACCACAACCGCCACAACAAAAAATTGGCATAACAAGCAGGTGGGAACTCTGGATCCAAAGGCTGTGAATGATGAAAATTGCACTGGAAATTCTAGTGAAGGCAACAATAATATTACATGGTGGAAGAGTAGTGCAGCCACAGAGAAGAACAAGGTGAAAATGAGAAGGAAACTAAGAGAGCCAAGGTTTTGTTTCCAAACAAGAAGTGATGTTGATGTTCTTGATGATGGTTATAAATGGAGGAAATATGGCCAAAAAGTTGTCAAGAACAGCCTTCATCCAAGGAGTTATTACAGGTGTACACATAGCAACTGCAGGGTGAAGAAGAGAGTTGAAAGACTCTCAGAAGATTGTAGAATGGTGATAACCACTTATGAAGGTAGACACAATCACATCCCTTCCGATGACTCAAATTCTTCAGACCATGAATGTTTCACTTCTTTTTAA 681 0.4126 MQGGERSGVPNYELQVPFTNITTPSQAIIHEMNFVQFEENHLLGFLSPTSSQSQSSQLSQSLDAATILATTTTPATIATTTATTKNWHNKQVGTLDPKAVNDENCTGNSSEGNNNITWWKSSAATEKNKVKMRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEGRHNHIPSDDSNSSDHECFTSF* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2559 226 Pfam WRKY DNA -binding domain 153 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2559 226 PANTHER WRKY TRANSCRIPTION FACTOR 12-RELATED 22 224 - -
Amo04g2559 226 SMART WRKY_cls 152 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2559 226 ProSiteProfiles WRKY domain profile. 147 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2559 226 SUPERFAMILY WRKY DNA-binding domain 144 209 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2559 226 Gene3D WRKY domain 138 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2559 226 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 22 224 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2559 Amo-Chr4 98578282 98582377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2559 1 226 WRKY Transcription Factor Family AT2G44745 58.442 1.86e-79 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g2559 WRKY 1.5e-24 CL0274