Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2546 ATGACCCCTCTTGTTTCTAACAAAAAATTTGCAGCTCTTCACAAAGGCTCTCAAAATGCCACTGTCTATGCTTTTAGTGAGTGTATGAAAGATCTCTCTAAACCTGATTGTGATGTTTGCTTCTCTGAATCCAAAACAAAGATCTTAAGATGCTCGCCGTTTCAGAGGGGCACTATTGGTGGAAGACTATTCCTTGATGGGTGCTACATGAGTGTTAGTGGTGAAGATAAAACTGTGTGTGGAACCAAGGATTTTGGTGGGGATAGGAGTGTTTACAAGGCTAATGCTATGGAACTGGTGAGGAATTTGAGCTTGGAAGCACAAAAGAAAAATAATGTTTGGTTCTTCCATGTTGGGTCTGTGAATCATAGGAATGTGAGTGTTTATGGTTTGGCTCAGTGCTGGAAATTTGTGAATGGAAGTGGATGCAAGACATGTTTGGATGAAGCTGTTACTAGGATTGAGTCATGTGCTTCAAAAGAAGAAGGAAGAGTGTTGAGTGTTGGTTGTTACTTGAGGTATTCAAGTAACAAGTTCTATAATGATAATTCAAGCAATGTTGTTGTCCCTTTCGGAAAACAAGGACATAGTAACCTTCCTCTGATTGTGGCTGCATCATCTTCTTCCTTGGCTCTGCTACTGATCGTTGTAACGGTTTCTTTCTTTGTAAGAATGAATATATTGAAGCAGAGAAGAGAAAGAAGAAAGTTTGGTGCGCTTTTGGAAACAGTGAACCAATCTAAACTAAATATGTCATATGAAGTTCTTGAACAAGCAACAAATTACTTCAATGTTTCCAATAAGCTAGGAGAAGGAGGAACAGGTTCAGTTTACAAAGGAGTTCTGCCAGATGGAAAGATTGTGGCCATAAAAAGGCTTAGCTTCATCACAACACAATGGGCAGATCATTTTTTCAATGAGGTGAATTTGATAAGTGGGATTCAACACAAAAATCTTGTAAAGCTTTTAGGGTGCAGCATTACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTACCTAATGGGAGCCTCTCTGATCACCTCTGTGTTAGAAAGAAATCTGAAGGGTTGAATTGGGAAGTGAGGCATAAGATCTTGTTAGGAACCGCAGAGGGCTTGGCCTATCTTCATGAGGAATCACAAATGAGAATCATTCATAGAGATATAAAATTGGGAAATGTTCTACTTGATGAAAACTTCACACCCAAGATTGCTGATTTTGGACTTGTTAGATTGTTCCCTGAAGACAATTCTCACCTTAGCACAACCATTGCTGGTACACTGGGTTACATGGCACCAGAGTATGTAATTCTTGGGAAGTTAACTGAGAAAGCAGATGTCTACAGTTTCGGAGTGTTAGCCATTGAAATTGTATCCGGCAAAAAAATTAGGTCAATTGTTCAAAATTCAATCTCCCTTCTACACGAGGTTTGGAACCTGTATGAAACAAAGAAGGTATGTGAAATAGTTGATCTAAGCCTAGAGGGAAATTACCCTGCAGAGGAAGCATGTAAACTCCTTAAGATAGGGTTGCTTTGTGCACAAGCTTCTCCAGAGCTGAGACCATCAATGTCACAAGTTGTGAAAATGATTAAGGACAACAATCATGAACAGATTTCTGAACCAACACAGCCACCATTTCTAAACCGTTGCAGCGGCGAATTCAGCAGATCTATTTTAGATGCTGAAGATAGTTTTAATGCTGGATCCTACGCTCATCATCACTCTTCAGTCTATAACACGAGTGAAAATCTGACTCAACCTTTGTACATTTCAAATCGGAGTTCAGAATATTTTAGTGCATGA 1806 0.3937 MTPLVSNKKFAALHKGSQNATVYAFSECMKDLSKPDCDVCFSESKTKILRCSPFQRGTIGGRLFLDGCYMSVSGEDKTVCGTKDFGGDRSVYKANAMELVRNLSLEAQKKNNVWFFHVGSVNHRNVSVYGLAQCWKFVNGSGCKTCLDEAVTRIESCASKEEGRVLSVGCYLRYSSNKFYNDNSSNVVVPFGKQGHSNLPLIVAASSSSLALLLIVVTVSFFVRMNILKQRRERRKFGALLETVNQSKLNMSYEVLEQATNYFNVSNKLGEGGTGSVYKGVLPDGKIVAIKRLSFITTQWADHFFNEVNLISGIQHKNLVKLLGCSITGPESLLVYEYVPNGSLSDHLCVRKKSEGLNWEVRHKILLGTAEGLAYLHEESQMRIIHRDIKLGNVLLDENFTPKIADFGLVRLFPEDNSHLSTTIAGTLGYMAPEYVILGKLTEKADVYSFGVLAIEIVSGKKIRSIVQNSISLLHEVWNLYETKKVCEIVDLSLEGNYPAEEACKLLKIGLLCAQASPELRPSMSQVVKMIKDNNHEQISEPTQPPFLNRCSGEFSRSILDAEDSFNAGSYAHHHSSVYNTSENLTQPLYISNRSSEYFSA* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2546 601 ProSiteProfiles Gnk2-homologous domain profile. 73 179 IPR002902 -
Amo04g2546 601 Pfam Protein kinase domain 264 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2546 601 SUPERFAMILY Protein kinase-like (PK-like) 246 531 IPR011009 -
Amo04g2546 601 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Amo04g2546 601 ProSiteProfiles Protein kinase domain profile. 263 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2546 601 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 551 - -
Amo04g2546 601 Gene3D - 3 76 IPR038408 -
Amo04g2546 601 Gene3D - 77 179 IPR038408 -
Amo04g2546 601 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 551 - -
Amo04g2546 601 ProSitePatterns Protein kinases ATP-binding region signature. 269 291 IPR017441 GO:0005524
Amo04g2546 601 Pfam Salt stress response/antifungal 9 73 IPR002902 -
Amo04g2546 601 Pfam Salt stress response/antifungal 85 176 IPR002902 -
Amo04g2546 601 CDD STKc_IRAK 269 532 - -
Amo04g2546 601 Gene3D Transferase(Phosphotransferase) domain 1 339 545 - -
Amo04g2546 601 Gene3D Phosphorylase Kinase; domain 1 223 338 - -
Amo04g2546 601 SMART serkin_6 263 539 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2546 Amo-Chr4 98358068 98361295 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2546 1 428 Receptor kinase-like Gene Family AT1G70530 56.264 8.02e-175 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo04g2546 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2546 - - aip:107643328 1187.17