Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2541 ATGGCCGGCATAGACTTGGGTTCAGCATCACACTTTGTTCATCACCTTCAACGCCCTGACCTTGAAGATGATGATAATAACCAAGACCAAGACCCGAGCAACAACCATCACGAGGGTCTTGACCTAGTTTCGCCAAATCAAGGCCCTGGTGATGTTGTTGCTCGTAGGCCAAGAGGGAGACCTCCGGGTTCCAAGAACAAGCCTAAGCCACCGGTGATCATCACAAGGGAGAGTGCAAACACTCTTAGGGCACACATCCTTGAAGTTAGTAGTGGTTGTGATGTGTTTGACTCTGTGGCCACTTATGCAAGAAAGCGTCAACGGGGAATCTGTGTTCTTAGCGGCAGCGGAACTGTTACCAACGTCACGCTCCGACAACCAGCAGCTGCCGGAGCAGTCGTGACGCTTCATGGAAGATTTGAGATACTTTCTCTATCAGGATCCTTTCTACCACCTCCTGCTCCACCAGGGGCCACAAGTTTAACTGTGTTTCTTGGTGGAGGCCAGGGACAAGTGGTAGGAGGAAATGTTATTGGGCCTTTAGTGGCTTCTGGGCCTGTTATTGTTATTGCCTCGTCGTTTACTAATGTAGCGTATGAAAGGTTGCCCTTAGACGAAGARGAGACTCTTCAGATAGAACAAGGGCAACCTTCTMSTGGRGGTGGRGGTGTCAGTGGCAGTGGTGTTAATAACTCTTTTCCYGATCCTTCTTCYGGGTTACCGTTCTTCAATCTACCTCTAAACATGCCTAATTTGGCCGTTGATGGTTGGGCCGGTGGGAACTCTAGTGGTGGAAGACAATCTTTTTGA 810 0.4901 MAGIDLGSASHFVHHLQRPDLEDDDNNQDQDPSNNHHEGLDLVSPNQGPGDVVARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVSSGCDVFDSVATYARKRQRGICVLSGSGTVTNVTLRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLTVFLGGGQGQVVGGNVIGPLVASGPVIVIASSFTNVAYERLPLDEEETLQIEQGQPSXGGGGVSGSGVNNSFPDPSSGLPFFNLPLNMPNLAVDGWAGGNSSGGRQSF* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2541 269 MobiDBLite consensus disorder prediction 209 235 - -
Amo04g2541 269 Gene3D - 82 216 - -
Amo04g2541 269 CDD DUF296 83 192 IPR005175 -
Amo04g2541 269 MobiDBLite consensus disorder prediction 1 74 - -
Amo04g2541 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 83 196 IPR005175 -
Amo04g2541 269 ProSiteProfiles PPC domain profile profile. 79 216 IPR005175 -
Amo04g2541 269 MobiDBLite consensus disorder prediction 211 235 - -
Amo04g2541 269 MobiDBLite consensus disorder prediction 15 36 - -
Amo04g2541 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 15 269 IPR014476 GO:0003680
Amo04g2541 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 269 - -
Amo04g2541 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2541 Amo-Chr4 98268720 98270206 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2541 1 269 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 56.678 1.57e-97 286
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2541 - - gmx:100803960 413.69