Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2513 ATGGAAGAAGAAGAAAATGATGATATGATCATCATGAACAACTACTCATTGAATGAAGAGCAAGAGTTCCTAATGAAAATCTTTAATGGCCGACCAGATTTCTCATCACCAGAAAGTAGCGAACATTATTATTATTATTCTTCCCCCAATAATAATAACAATAATAATAATGATCCTAATAATTGTGACACAAGCCCCAATAACAATAATAGTAGTGTATCATTTGAAGACACAAGAGTGCAAAAAAGTAAAAGCTCCAATTCTATTCCTTCTTCTACCTATCTATTATCATTTGAGCCTAATTCATTTAAAGGAAGAAGTAGAAGTGATGATGGGTTCGAATTATTTGAAGCAAGTATGAGTAAAAATGATGAAGATGCAACAACAAAAAAGCGCAAAGGAAAGACAGCAGATCACATAATAGCTGAGAGGAAAAGGAGGCAAGACCTAACAAGAAGCATCATCCAACTTTCAGCTACTATACCTGGCTTGAAGAAGATGGACAAAGCTCATGTAATTCGTGAATCTCTAAGTTACATAAAAGTTCTTCAAGATCGAGTTAAAGAGTTGGAGAACCAAATCAAAGATAGAAGAGTAGATTCAGCAATATTCATAGGAAGATCTCAAGACTCATCATCAACAGATAAAAGCACAATCAGCTATGAAATAACATCAGATAATAACAATGGTGGTGGTATTTATAATGAATTATCACTTGAGATTGAAGCAAAAGTCATGGAAAAAGAAGTTCTCATTAGAATCCAATGTGAGAAGCAAAAAAACAACATAATAATGCTCAAAATACATGCCTTTCTTGACAAGCTTCATCTCTCTATAGCAAGTAACAGTGTGTTACCATTTGGGACTTCTACTCTCGTAATAATTACCATTGTTGCTGAGATGGATAATGGTGGCAAATTCAGCATGACAATGGATGAACTAGTAAAAAGCCTCAGAGAAGATTTGATGGAGACAAACAATAATGCATGGTAG 993 0.3404 MEEEENDDMIIMNNYSLNEEQEFLMKIFNGRPDFSSPESSEHYYYYSSPNNNNNNNNDPNNCDTSPNNNNSSVSFEDTRVQKSKSSNSIPSSTYLLSFEPNSFKGRSRSDDGFELFEASMSKNDEDATTKKRKGKTADHIIAERKRRQDLTRSIIQLSATIPGLKKMDKAHVIRESLSYIKVLQDRVKELENQIKDRRVDSAIFIGRSQDSSSTDKSTISYEITSDNNNGGGIYNELSLEIEAKVMEKEVLIRIQCEKQKNNIIMLKIHAFLDKLHLSIASNSVLPFGTSTLVIITIVAEMDNGGKFSMTMDELVKSLREDLMETNNNAW* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2513 330 Coils Coil 173 200 - -
Amo04g2513 330 Pfam Helix-loop-helix DNA-binding domain 137 184 IPR011598 GO:0046983
Amo04g2513 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 134 183 IPR011598 GO:0046983
Amo04g2513 330 MobiDBLite consensus disorder prediction 38 91 - -
Amo04g2513 330 SMART finulus 140 189 IPR011598 GO:0046983
Amo04g2513 330 PANTHER BHLH TRANSCRIPTION FACTOR 17 327 - -
Amo04g2513 330 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 17 327 - -
Amo04g2513 330 Gene3D - 124 199 IPR036638 GO:0046983
Amo04g2513 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 133 199 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2513 Amo-Chr4 97789444 97792314 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2513 46 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.664 2.23e-37 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo04g2513 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2513 - - adu:107486034 530.02