Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2510 ATGGATGATTCAACCTTAGATTGTCAGCTGAATCAGGGCGAAGTGGATTATGAATTTGAATCTAACGAAGTTCCTGAGCTGAGTTGTTGTCGTTCAGGTCCTCTCTCTGTTGTTGATGACCAGTTTGTTCCGAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGGAAAATTTTACAGGAACTACGCCAAGGCTGCAGGTTTTTCTACAAGAGTTCGGAGCACAAATAGGAAGGGAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGGAAAATGGAAATCTAAAATATCTCCGACCGAGAAGACTAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACACATTGAAGGATGTCGGTGCTTGGATCATTTCAAAGGTTGTGCTGGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCCGGTATCAGACCAAGCAAAACCTACCAATCATTTGTTGCGGCTGCCGGGGACCGTCATATATGGGTTCCTATCTATCTGGATCACCACTTCTGGGCAGGGATGAGAAGCACACAAAGGAGCGAGAGGATGCATTCATTTTTTAACAAGTTTATCACCCGGAACAGCTCGCTTATTCAGTTCGTCAAACAATACGATAATTGCCTCGGAAGCCGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTCATACCGTGTGCAACCAAATCCTCCATTGAAGCTCAGTTTCAAGATGTGTACACTCATCAAAAGTTTAGGGAAGTCCAAGCGCAATTCAGAGGAAAGGCGAATTGCATCACCAGATTAACGAATTCCGCTCTAGGCTATTCAGTATACGAAGTCGGAGAACAAGTTTCCAGCTCAATATTCAACAAGTTTGTGGTTACTTACGACTCAGTTGCAGCCGAGGTAAAATGCCAATGCTTATTATTCGAGTCGAGAGGGATACTGTGTCGTCACGCACTAAGCGTGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCGAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACGAGCCACTGTTGGAGCCAAGAAGCAAGAGGTTTGACCAATTGGAGCTGACTGCAATTCTGTACCGTGCGTACGATAATGTCATGGCTGAGATGGAATCATTAAAAGTCAAAAGGAAGGGGACATCTTCTTTATCCCACGAAGACGCCAACTTGGAATCCGTTAACGAGCTTCAAAGCCCGCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACAGATTGCAAATGCCACAAAGAAGAAGAAAACGAAAGTTTTAAGCGAGATAAACTTGTTTGATGCCGCATCAGTGGTGCATTCAAATTCCAGCCAATATCAAGGACATGTTATGAATTATCAGTTCAGGGTACCAGCAGCAGGGGATAACTCTTTGGGTGTATAG 1554 0.4434 MDDSTLDCQLNQGEVDYEFESNEVPELSCCRSGPLSVVDDQFVPKVGMTFTTLEDAGKFYRNYAKAAGFSTRVRSTNRKGNEIKNQLITCSREGKWKSKISPTEKTNPTAGLNCPARIYIHTLKDVGAWIISKVVLDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAGIRPSKTYQSFVAAAGDRHIWVPIYLDHHFWAGMRSTQRSERMHSFFNKFITRNSSLIQFVKQYDNCLGSREQAERESDAADFHTVIPCATKSSIEAQFQDVYTHQKFREVQAQFRGKANCITRLTNSALGYSVYEVGEQVSSSIFNKFVVTYDSVAAEVKCQCLLFESRGILCRHALSVLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDEPLLEPRSKRFDQLELTAILYRAYDNVMAEMESLKVKRKGTSSLSHEDANLESVNELQSPPRIRTRGRPKNRLGSKLDKQIANATKKKKTKVLSEINLFDAASVVHSNSSQYQGHVMNYQFRVPAAGDNSLGV* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2510 517 ProSiteProfiles Zinc finger SWIM-type profile. 319 355 IPR007527 GO:0008270
Amo04g2510 517 SMART 26again6 330 357 IPR006564 GO:0008270
Amo04g2510 517 MobiDBLite consensus disorder prediction 430 457 - -
Amo04g2510 517 Pfam SWIM zinc finger 321 352 IPR007527 GO:0008270
Amo04g2510 517 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 187 421 IPR031052 GO:0006355
Amo04g2510 517 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 31 155 IPR031052 GO:0006355
Amo04g2510 517 PANTHER OS03G0843700 PROTEIN 187 421 - -
Amo04g2510 517 PANTHER OS03G0843700 PROTEIN 31 155 - -
Amo04g2510 517 MobiDBLite consensus disorder prediction 430 444 - -
Amo04g2510 517 Pfam FAR1 DNA-binding domain 58 143 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2510 Amo-Chr4 97763456 97766494 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g2510 FAR1 5.2e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2510 - - adu:110280503 587.8