Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2501 ATGGATCAATATCGCATAAACTCTTGGGAAGATATTGGTAAGATTGATTTTTCAAGTCTATCTATGAAAAATATTTGTCAATTGCACTTTGCTGATCTTGGCTTGGCATTCGAATTTTATAATTCATATGCCAAGACGAGGGGCTTCAGTGTGCGAAAGAGTAGGAGTAGAATAGTTGATGGAAAAGTTAGAGAAAAAGCATATGTTTGTTCTTGTGAAGGGTATAGATTAGAAAAATGGAACCATATGAAAAATCGAGTTAGGGAGCCAAAACCAGAGACAAGATGTGGTTGTATGAGTAAACTTCATGTTTTCTTTGATGCGGTAATTGAGAGTTGGGTAGTGAGAGATTTTTGTGATGAACACAATCATGATCTTGTTGTTCCAAAATATGTTAAATCACGCTATAATTTGACAGAATTTGTTCAACACTTCCAGCGTTGTTTGAGCTACATGCGGCACAGAGAGGATTTGGCAGACTTTAAATCATCAACTGGACAACCTGTGATGCAGACACACTTTCAACAATTAGAAAGGTCAGCAGCTACCATTTATACCTGGCAAATTTTTGTCTTGTTCCGTTCAATGCTCCACAAGGCCAGCACATTGAAGGTAATATATGAAGAGGAAAAGAGTTCTTGCAAGATTTATCAGGTGTCAAAATTTTACAAGCCTAATATGATATGGCATGTGTCTTTTCACGGAGAGCAAGATGAATTTAAATGCTCATGCATGAGAATGGACTCCATAGGTATTCCATGTAGTCATATACTTGCTGTTTTGGGTTTTCTAGACATTGCAGAGCTGCCAAAATCATTAGTGCTGCGAAGATGGACTAGAAAAGCGAAGGAAGGCATTAGTGGGTATGATGACATGGGCGGCTTGATGGAGGATTCCTTGGCTATCAGTCGGCGTGCATGTTTGGCACATTGGTGTAAACAAATTATGAACGAAGGGTGCCTAAAAGGGGATATTTTTAATGAATCACGAGATGTATTGGTAAATATACTTTCATGTATTAGGACTCATAGCGGGGACAATAACATGATGGAGGAGCATGCGGAATACATGTATGAAGACCTTGCAAAGAATGGAAGTACTGAGATAGAGACCACAAGGAAGCCTAAGCGTTGCAGCTACTGTCGCAAGGGTGGGCATAACATTGCTACGTGTTCCATGAAGAAAATGGATGAAAGGACTCCCCAATTTGATGATGACGCTGCGGAGAATATTGAGGGTGAAGACTACTCCTTCGTAGATGCTGAAAGTGATGAGTATGTTCACACTGAATGGTTTGAGGAGGAAGATGAATATTTAGATTCCTCAAGGTATTATGAACAGAGTGGTGGCGAGACTGAGTCCTCAATGGATTACGATTCTGGTGGGGCAAATGATGATGATGATGAGGCAGAGTTTATAATAGAAAAATTATATGACAAATATGTATTTTTGTACAGATATTAA 1464 0.3907 MDQYRINSWEDIGKIDFSSLSMKNICQLHFADLGLAFEFYNSYAKTRGFSVRKSRSRIVDGKVREKAYVCSCEGYRLEKWNHMKNRVREPKPETRCGCMSKLHVFFDAVIESWVVRDFCDEHNHDLVVPKYVKSRYNLTEFVQHFQRCLSYMRHREDLADFKSSTGQPVMQTHFQQLERSAATIYTWQIFVLFRSMLHKASTLKVIYEEEKSSCKIYQVSKFYKPNMIWHVSFHGEQDEFKCSCMRMDSIGIPCSHILAVLGFLDIAELPKSLVLRRWTRKAKEGISGYDDMGGLMEDSLAISRRACLAHWCKQIMNEGCLKGDIFNESRDVLVNILSCIRTHSGDNNMMEEHAEYMYEDLAKNGSTEIETTRKPKRCSYCRKGGHNIATCSMKKMDERTPQFDDDAAENIEGEDYSFVDAESDEYVHTEWFEEEDEYLDSSRYYEQSGGETESSMDYDSGGANDDDDEAEFIIEKLYDKYVFLYRY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2501 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 129 IPR031052 GO:0006355
Amo04g2501 487 MobiDBLite consensus disorder prediction 445 459 - -
Amo04g2501 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 36 129 - -
Amo04g2501 487 SMART 26again6 240 267 IPR006564 GO:0008270
Amo04g2501 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 131 403 IPR031052 GO:0006355
Amo04g2501 487 Pfam FAR1 DNA-binding domain 38 127 IPR004330 -
Amo04g2501 487 ProSiteProfiles Zinc finger SWIM-type profile. 229 265 IPR007527 GO:0008270
Amo04g2501 487 MobiDBLite consensus disorder prediction 444 469 - -
Amo04g2501 487 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 131 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2501 Amo-Chr4 97657604 97661569 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g2501 FAR1 4.1e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2501 - - ahf:112719698 694.886