Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2497 ATGCAGAACGAGGAGGGACAGATCACTGAGCTCTACATTCCTAGGAAGTGTGCTAGCTTCAGCAAACCAGACTCTCTCTTGAAGAAAGAGAACAGGACCGAGGAGTGGGCCCTCGCCAAAACCCAACAGCTCCAAGCCGCTAAGAAAACCAGCTTCCAAACTCGCAAGTTGATTTTTAACAGAGCCAAACACTACTCTAAGGAATACGCCCAACAGGAAAAAGAGCTAATTAGGTTGAAGCGTGAGGCCAAGCTTAAAGGAGGCTTTTATGTCGATCCTGAAGCTAAACTCTTATTCATCATCAGGATCCGTGGTGTCAATGCTATGCACCCTCAGACAAGGAAGATTTTGCAGCTCTTGCGGTTGAGGCAGATCTTTAATGGTGTATTCCTCAAGGTCAATAAAGCAACGATGAATATGCTGCACATTGTAGAGCCGTATGTTGCATACGGGTATCCCAATCTGAAGAGTGTTAGAGAATTAATTTACAAGAGAGGCTATGGAAAAGTTGAGAAGCAGCGAATTGCGTTGACAGACAACGCCATCATTGAACAGGCATTGGGGAAGCACGGAATTATATGCGTTGAAGATCTGATCCACGAGATAATGACCGTTGGTCCACACTTTCGAGAAGCAAACAACTTCCTATGGCCCTTCAAATTGAAGGCTCCATTGGGTGGTTTGATGAAGAAACGGAATCATTATGTCGAAGGAGGTGACGCAGGTAACAGGGAAGCTTACATAAATGAGCTTATTAGAAGGATGAATTAA 771 0.4462 MQNEEGQITELYIPRKCASFSKPDSLLKKENRTEEWALAKTQQLQAAKKTSFQTRKLIFNRAKHYSKEYAQQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGVNAMHPQTRKILQLLRLRQIFNGVFLKVNKATMNMLHIVEPYVAYGYPNLKSVRELIYKRGYGKVEKQRIALTDNAIIEQALGKHGIICVEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLMKKRNHYVEGGDAGNREAYINELIRRMN* 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2497 256 Pfam Ribosomal protein L30p/L7e 98 148 IPR016082 -
Amo04g2497 256 SUPERFAMILY Ribosomal protein L30p/L7e 97 256 IPR036919 -
Amo04g2497 256 Gene3D - 202 256 IPR036919 -
Amo04g2497 256 Gene3D - 97 201 IPR036919 -
Amo04g2497 256 PANTHER 60S RIBOSOMAL PROTEIN L7 22 256 IPR039699 -
Amo04g2497 256 TIGRFAM uL30_euk: 60S ribosomal protein uL30 23 256 IPR005998 GO:0000463|GO:0003735|GO:0022625
Amo04g2497 256 CDD Ribosomal_L7_archeal_euk 97 256 IPR035808 -
Amo04g2497 256 PANTHER 60S RIBOSOMAL PROTEIN L7-RELATED 22 256 - -
Amo04g2497 256 Coils Coil 62 82 - -
Amo04g2497 256 ProSitePatterns Ribosomal protein L30 signature. 116 148 IPR018038 -
Amo04g2497 256 Pfam Ribosomal L30 N-terminal domain 23 93 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2497 Amo-Chr4 97574811 97580282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2497 23 256 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 80.769 2.61e-144 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2497 K02937 - gmx:100500011 405.986