LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g2497	ATGCAGAACGAGGAGGGACAGATCACTGAGCTCTACATTCCTAGGAAGTGTGCTAGCTTCAGCAAACCAGACTCTCTCTTGAAGAAAGAGAACAGGACCGAGGAGTGGGCCCTCGCCAAAACCCAACAGCTCCAAGCCGCTAAGAAAACCAGCTTCCAAACTCGCAAGTTGATTTTTAACAGAGCCAAACACTACTCTAAGGAATACGCCCAACAGGAAAAAGAGCTAATTAGGTTGAAGCGTGAGGCCAAGCTTAAAGGAGGCTTTTATGTCGATCCTGAAGCTAAACTCTTATTCATCATCAGGATCCGTGGTGTCAATGCTATGCACCCTCAGACAAGGAAGATTTTGCAGCTCTTGCGGTTGAGGCAGATCTTTAATGGTGTATTCCTCAAGGTCAATAAAGCAACGATGAATATGCTGCACATTGTAGAGCCGTATGTTGCATACGGGTATCCCAATCTGAAGAGTGTTAGAGAATTAATTTACAAGAGAGGCTATGGAAAAGTTGAGAAGCAGCGAATTGCGTTGACAGACAACGCCATCATTGAACAGGCATTGGGGAAGCACGGAATTATATGCGTTGAAGATCTGATCCACGAGATAATGACCGTTGGTCCACACTTTCGAGAAGCAAACAACTTCCTATGGCCCTTCAAATTGAAGGCTCCATTGGGTGGTTTGATGAAGAAACGGAATCATTATGTCGAAGGAGGTGACGCAGGTAACAGGGAAGCTTACATAAATGAGCTTATTAGAAGGATGAATTAA	771	0.4462	MQNEEGQITELYIPRKCASFSKPDSLLKKENRTEEWALAKTQQLQAAKKTSFQTRKLIFNRAKHYSKEYAQQEKELIRLKREAKLKGGFYVDPEAKLLFIIRIRGVNAMHPQTRKILQLLRLRQIFNGVFLKVNKATMNMLHIVEPYVAYGYPNLKSVRELIYKRGYGKVEKQRIALTDNAIIEQALGKHGIICVEDLIHEIMTVGPHFREANNFLWPFKLKAPLGGLMKKRNHYVEGGDAGNREAYINELIRRMN*	257

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g2497	256	Pfam	Ribosomal protein L30p/L7e	98	148	IPR016082	-
	Amo04g2497	256	SUPERFAMILY	Ribosomal protein L30p/L7e	97	256	IPR036919	-
	Amo04g2497	256	Gene3D	-	202	256	IPR036919	-
	Amo04g2497	256	Gene3D	-	97	201	IPR036919	-
	Amo04g2497	256	PANTHER	60S RIBOSOMAL PROTEIN L7	22	256	IPR039699	-
	Amo04g2497	256	TIGRFAM	uL30_euk: 60S ribosomal protein uL30	23	256	IPR005998	GO:0000463\|GO:0003735\|GO:0022625
	Amo04g2497	256	CDD	Ribosomal_L7_archeal_euk	97	256	IPR035808	-
	Amo04g2497	256	PANTHER	60S RIBOSOMAL PROTEIN L7-RELATED	22	256	-	-
	Amo04g2497	256	Coils	Coil	62	82	-	-
	Amo04g2497	256	ProSitePatterns	Ribosomal protein L30 signature.	116	148	IPR018038	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g2497	Amo-Chr4	97574811	97580282	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g2497	23	256	Cytoplasmic Ribosomal Protein Gene Family	AT3G13580	80.769	2.61e-144	402

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g2497	K02937		-	gmx:100500011	405.986

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