Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2464 ATGATAAAAACATGGCTAAGGAACCAACCACTTCATCATCATCACTCATCAGAAAACAAAGAAACCATGATTGCATCTTCAAATAATACTACTGCACCAACAACTCAAACCTTGTCGCTTTCTATGAGTACTGGCTCACAATCTCTCCCGCTATTACCACCTACTAATAATAATAATGTTAGTGTTGCCGGTGCCGGTGCCGGAGGAGGCGGCGGAGACAGTTATTCTTCGTCGGAAATAAACAGCAACAACAACAACAAACAGATAGTAGTAGTAGCAGGAGGGTCTTCATCAACGGGAGCAGTTGAAAATGGAAGCATTGTTGAGAATAACAATGTGACCAAAAAATCCATTGACACTTTTGGACAAAGAACTTCCATTTACCGTGGTGTAACAAGGCATAGGTGGACAGGGAGATATGAAGCTCATTTGTGGGATAATAGTTGTAGAAGAGAGGGACAGACTCGCAAAGGGAGGCAAGTTTACCTGGGAGGTTATGATAAAGAGGAAAAAGCAGCTAGAGCCTATGATTTAGCAGCCCTAAAATACTGGGGAACCACAACAACAACAAATTTTCCGATTAGTCAATATGAAAAAGAATTAGAAGAAATGAAGCACATGACAAGACAAGAGAAGAGTAGTGGATTTTCTCGTGGTGCATCCATTTATCGTGGAGTAACAAGGCATCATCAACATGGTAGATGGCAAGCTCGGATTGGAAGAGTTGCAGGCAACAAAGATCTTTATCTAGGAACTTTTAGCACTCAGGAAGAGGCAGCAGAAGCATATGACATAGCAGCCATAAAGTTCCGAGGTTTGAATGCAGTTACAAACTTRGACATGAACAGATACGATGTGAAGAGCATACTAGAGAGCAGCACCTTGCCCATTGGTGGCGCCGCCAAGAGGTTGAAGGACATGGACAATGGAGACCTAATTAATGTAGACAATAGTGTTCACCAAAGACAACACCAAGAAGATCACAGCAACAACATCAATTCTCATTCTCTAACTGATGGAATCAACAACTTTGTAACTGCGGCGGCRGCCACCCATCATGGTGATTCTTCTGATCAAAACAATGTGTCTCACAATTTTCATCAAGAGATTCATCCTTTGCAACTAGGGGGTAGTACCCACAATTTCTTTCAGCATGGTATCATGACATTGGATCATTCTGCTTCCATGGATAACAATAACAGCTCTGGATCAAGCTCTGTGGGACTTGGCTATGAAAGTGTTTTTGGCAGTGAGGCATATAATCAAACACATGGAAGGCATCTGTATTATCAGCAACAATCATCAYCAATGGATCATAACAATAATGGAGCTGTAGTAGTTAAGGAATTTGCTATATTTTTTTTTACTATTTTTAGATTTTTTTTGTAA 1389 0.4068 MIKTWLRNQPLHHHHSSENKETMIASSNNTTAPTTQTLSLSMSTGSQSLPLLPPTNNNNVSVAGAGAGGGGGDSYSSSEINSNNNNKQIVVVAGGSSSTGAVENGSIVENNNVTKKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFPISQYEKELEEMKHMTRQEKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNLDMNRYDVKSILESSTLPIGGAAKRLKDMDNGDLINVDNSVHQRQHQEDHSNNINSHSLTDGINNFVTAAAATHHGDSSDQNNVSHNFHQEIHPLQLGGSTHNFFQHGIMTLDHSASMDNNNSSGSSSVGLGYESVFGSEAYNQTHGRHLYYQQQSSXMDHNNNGAVVVKEFAIFFFTIFRFFL* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2464 462 Coils Coil 194 214 - -
Amo04g2464 462 Pfam AP2 domain 222 272 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 Pfam AP2 domain 127 185 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 Gene3D AP2/ERF domain 127 195 IPR036955 GO:0003700|GO:0006355
Amo04g2464 462 Gene3D AP2/ERF domain 222 281 IPR036955 GO:0003700|GO:0006355
Amo04g2464 462 SMART rav1_2 127 199 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 SMART rav1_2 222 286 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 CDD AP2 221 280 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 MobiDBLite consensus disorder prediction 21 63 - -
Amo04g2464 462 ProSiteProfiles AP2/ERF domain profile. 222 280 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 1 441 - -
Amo04g2464 462 SUPERFAMILY DNA-binding domain 221 281 IPR016177 GO:0003677
Amo04g2464 462 ProSiteProfiles AP2/ERF domain profile. 127 193 IPR001471 GO:0003700|GO:0006355
Amo04g2464 462 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 441 - -
Amo04g2464 462 MobiDBLite consensus disorder prediction 1 82 - -
Amo04g2464 462 SUPERFAMILY DNA-binding domain 126 195 IPR016177 GO:0003677
Amo04g2464 462 CDD AP2 126 195 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2464 Amo-Chr4 97193817 97199336 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2464 101 309 AP2-EREBP Transcription Factor Family AT5G17430 83.410 1.02e-128 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Amo04g2464 AP2 9.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2464 K09285 - qsu:111984882 457.218