Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2428 ATGAGCTCGAAGGAGAGACCCACTCTTGGTGGCACGCGGATTAAGACCCGCAAACGGAATATTGCAGCGCCGCTGGACCCTGCAGCATTCGCGGATGCAGTGGTCCAGATTTATTTGGATAATGCTGGTGATCTGGAACTTGTTGCTAAGAACATTGAATCTTCAGACCTTAACTTCTCAAGATACGGTGACACCTTTTTTGAGGTTGTTTTCACTGGGGGTCGTACACAACCTGGAACTACCAAGCCTGATGAGGGGGAGCGCCATCCATACTCTATAATAGAGTGTGAGCCAAAGCGTGAAGTCATCTTACCATCTGTAATCTACATACAAAAGATTTTGAGGCGAAGGCCATTCCTCATTAAGAACCTCGAAAATGTTATGCAAAAGTTCCTCCAGTCCTTGGAGCTTTTCGAGGAAAATGAGAGGAAAAAGCTGGCAATCTTCACAGCACTTGCATTCTCCCAGAAGCTCTCTGGTCTTCCGCCAGAGACCGTGTTCCAACCACTTCTTAAGGATAACCTTGTGGCCAAAGGGCTAGTTCTGTCATTCATAACCGACTTCTTTAAGGAGTATCTGATTGACAACAGCCTTGATGATCTTATTTCAATTCTGAAAAGAGGAAAAGTAGAGGATAACCTCTTGGAGTTTTTCCCTCCTACAAAAAGATCCAACGAGTCTTTCTCTGAGCATTTCAGCAAGGAAGGACTAGTGGCATTGGTTGAGTACAATGAGAAGAAAATATTTGAGGTGAAACTTAAGGAAATGAAGTCTGCTTTGACAACTCAGATAACGGAGGAGGTTGATATATCTGAAGTAATTGAGAATGTGAAGGTGCGGGTCCGAGATGCTAAATTGCCAGATATTGAAGTTGTCCGGGTATTGTGGGATGTTTTGATGGATGCTGTCCAGTGGTCAGGGAAAAATCAGCAACAGAATGCAAATTCAGCCCTACGCCAGGTAAAAACCTGGGCAGAACTGTTGAACACATTCTGCACCACTGGGAAGCTGGAGCTAGAACTGATGTACAAGGTACAGATGCAATGCTACGAAGATGCAAAACTGATGAAGCTGTTCCCGGAGATTATTAGATCGCTCTACGAGCAGGATGTGCTGGCTGAAGACACCATCCTTCATTGGTTCCGCAAAGGAACAAACACGAAGGGCAGGCAAACCTTTGTGAAAGCATTGGAACCCTTTGTGAATTGGCTGGAGGAGGCAGAAGAGGAGGAATAA 1236 0.4515 MSSKERPTLGGTRIKTRKRNIAAPLDPAAFADAVVQIYLDNAGDLELVAKNIESSDLNFSRYGDTFFEVVFTGGRTQPGTTKPDEGERHPYSIIECEPKREVILPSVIYIQKILRRRPFLIKNLENVMQKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFITDFFKEYLIDNSLDDLISILKRGKVEDNLLEFFPPTKRSNESFSEHFSKEGLVALVEYNEKKIFEVKLKEMKSALTTQITEEVDISEVIENVKVRVRDAKLPDIEVVRVLWDVLMDAVQWSGKNQQQNANSALRQVKTWAELLNTFCTTGKLELELMYKVQMQCYEDAKLMKLFPEIIRSLYEQDVLAEDTILHWFRKGTNTKGRQTFVKALEPFVNWLEEAEEEE* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2428 411 ProSiteProfiles W2 domain profile. 246 411 IPR003307 GO:0005515
Amo04g2428 411 SMART 542_3 325 410 IPR003307 GO:0005515
Amo04g2428 411 SUPERFAMILY ARM repeat 252 408 IPR016024 -
Amo04g2428 411 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 411 - -
Amo04g2428 411 CDD W2_eIF5C_like 216 404 IPR043510 -
Amo04g2428 411 Pfam eIF4-gamma/eIF5/eIF2-epsilon 338 411 IPR003307 GO:0005515
Amo04g2428 411 PANTHER BASIC LEUCINE ZIPPER AND W2 DOMAIN-CONTAINING PROTEIN 1 411 - -
Amo04g2428 411 Gene3D - 243 411 - -
Amo04g2428 411 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2428 Amo-Chr4 96768681 96772651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2428 300 407 Eukaryotic Initiation Factors Gene Family AT2G34970 31.818 6.86e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2428 - - gmx:100782537 773.081