Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2424 ATGGAAGATGACAACCACCGTAACAACATAGATAATAAGAACACGAACACAACCACCAACAACAACAACGTTAGTAGTAACAATTGTAGTGATTCAAAAAACATGGATTCTGATTCAAAAGGTGGAGTCTTTCCGGCTTTTCCAGCAAAGAGAAGCATAGCTGAGAGAAGGGGTTTCAATTCCAATGCAGCAAGGATCAACACAGCTAGGTTCAGAACAAACGCAATCACAACAAGCCCTTTCGCTTCTCCATCTCCATCTTCTTGTTCTGCATCACCATGCATTACTATACCCCCAGGCATTAGTCCCACTGCATTGCTTGATTCTCCGATCATGCTTCCCAATTCTCAGGCTATGCCTTCTCCAACTACTGGCTCATTTCATTGGCTAAGTTCTTTGCCACTTGATCAAGGGAATCTCAATGATGCTCCTGATTCTTCCCTCAAGTTTAAGAACAATGCCACCCTTGCCGATCCTAATCCTTTGCCTCCTTACTCTGCGTCTCTGAATCAGGTTTCTAGTAATTGGCACATGGTAAAGGGAGGAAATACAGACTGTCAATCAATTGTTCCAGTTCTGCCGCCGATAGATTTTTCGTTCCCGGAAGACTTTTCGAAAGGACAAAACGCAAAAAGTATTGAGTCCCGTTCATTCAATGATGTGAAAATGGTAAATTGTTCACTTGTTAATGTTAATAAAGTTGAGATGATGCAAATATCACGTTCCGATGAAGCTGGTGATGAAAGCACTCTGCCGAAAAATGTTACTCTTGGTGGGGATATCAGAAGGCAACCTGTTATGGAGAAAGACCAGAAGGAGACCTTGCTTGCAACTGGAGTGGTAAGGACCTCGGAGGATGGTTATAATTGGAGAAAGTATGGTCAGAAACAAGTAAAAGGTAGCGAGTATCCTAGGAGTTATTATAAATGTACTCAACCTAATTGTCAGGTCAAGAAGAAGGTGGAAAGATCCCATGATGGCCAAATAACAGAAATTATCTATAAGGGTACTCATAACCATTCAAAACCACACCTTGGTCGTCGAGCGTTAGGGCTTTCCACTGATGAGATGTCAGAGATGGGTGAAGCTGGTGAAAACTATGCTAAACTTGAAGGTCCAGGTTGGAAAAATGTTCAACCGGGAGCAAAAGACACAAAGCACAGTTTGGATTGGAAGGCTGATGGTCAGGAAAGAACATCCTCAACTTCTGTCGTGACTGAACTTTCGGATCCTATGTCGACTAACAAAGGTAAACCTTTGTGTGCCTTTGAAGCGGAAGACACTCCCGAACATTCTTCCACACTTGCCAGTAATGATGGTGATGAAGATGGAACCACTCAAGCACTAGCACCAGCTGAGGATGATGCTGAAGATGATGAATCAGATTCCAAAAGAAGGAAAAAAGAGAACTACTTGGTTGAATCAACTTTGCCTTCTAGGGCTGTTCGTGAGCCAAGAGTGGTGGTCCAAATTGAGACCGAGATTGACATACTCGATGATGGTTATCGATGGCGCAAGTATGGACAAAAGGTTGTCAAAGGAAACCCAAACCCAAGGAGCTACTATAAATGCACAAGTGCCGGATGTCCCGTGAGGAAACACGTCGAAAGGGCTTCGCACAATACGAAATATGTAATCACTACATATGAGGGCAAACATAATCATGAAGTGCCGACGGCCAGAACCAACAATCATGTAAGCTCGAATGATGGTGGTTTACCTCCCAGTGGTCCTAATGGCCAATCAGCTCTTGCATTACCTGGCAGTGCTGTTATCCCGAAGTCTGAAAATCATCAAACTCTTACGTCTCATTTTGATCGAAAACCTGAATTCGGCAGCGACTTTCTTCGGCCGAGTTTGGTTGGAGCATTCAGCAACAATTTGAAGTTCGGTTCTTCCCCCATGTGCCAAATGAAGTATCCTTCCTTGAGTAGCACCATGCCTTACGGTTCGTTTGGACTGAATCCCGATCGCTGCACTGCCCCACAAGCTGGATCTATTCCCTCAGTGTATCCCGACTTTCCAATGCCGCTTCCCTTGAATCTTCCCTCATCCGGAAACTTCTCTCTTGCTGGACTAAACTTCAACTGTGCAAAGCCAATGAATCCAGTGCAGCCTTTCCTTTCAGGGCAACAAGTGAAGGATATTGATACTGGGTTCTTGAGGCCTAAACAGGAGCAGAAGGATGATGCAATATATGGAACATGCTTACCTCCAGTTGATCATGGAAATTCTTCATCAGCAGCACCATCATCCATTTACCAGCAAGTCATGCAAAATTTCCCTTCATAA 2292 0.4398 MEDDNHRNNIDNKNTNTTTNNNNVSSNNCSDSKNMDSDSKGGVFPAFPAKRSIAERRGFNSNAARINTARFRTNAITTSPFASPSPSSCSASPCITIPPGISPTALLDSPIMLPNSQAMPSPTTGSFHWLSSLPLDQGNLNDAPDSSLKFKNNATLADPNPLPPYSASLNQVSSNWHMVKGGNTDCQSIVPVLPPIDFSFPEDFSKGQNAKSIESRSFNDVKMVNCSLVNVNKVEMMQISRSDEAGDESTLPKNVTLGGDIRRQPVMEKDQKETLLATGVVRTSEDGYNWRKYGQKQVKGSEYPRSYYKCTQPNCQVKKKVERSHDGQITEIIYKGTHNHSKPHLGRRALGLSTDEMSEMGEAGENYAKLEGPGWKNVQPGAKDTKHSLDWKADGQERTSSTSVVTELSDPMSTNKGKPLCAFEAEDTPEHSSTLASNDGDEDGTTQALAPAEDDAEDDESDSKRRKKENYLVESTLPSRAVREPRVVVQIETEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCPVRKHVERASHNTKYVITTYEGKHNHEVPTARTNNHVSSNDGGLPPSGPNGQSALALPGSAVIPKSENHQTLTSHFDRKPEFGSDFLRPSLVGAFSNNLKFGSSPMCQMKYPSLSSTMPYGSFGLNPDRCTAPQAGSIPSVYPDFPMPLPLNLPSSGNFSLAGLNFNCAKPMNPVQPFLSGQQVKDIDTGFLRPKQEQKDDAIYGTCLPPVDHGNSSSAAPSSIYQQVMQNFPS* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2424 763 Gene3D WRKY domain 272 344 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 Pfam WRKY DNA -binding domain 285 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 Pfam WRKY DNA -binding domain 499 556 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 MobiDBLite consensus disorder prediction 11 37 - -
Amo04g2424 763 MobiDBLite consensus disorder prediction 1 43 - -
Amo04g2424 763 MobiDBLite consensus disorder prediction 557 586 - -
Amo04g2424 763 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 16 740 - -
Amo04g2424 763 MobiDBLite consensus disorder prediction 560 576 - -
Amo04g2424 763 ProSiteProfiles WRKY domain profile. 279 343 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 740 IPR044810 GO:0003700
Amo04g2424 763 MobiDBLite consensus disorder prediction 430 444 - -
Amo04g2424 763 Gene3D WRKY domain 485 551 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 SMART WRKY_cls 498 557 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 SMART WRKY_cls 284 342 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 MobiDBLite consensus disorder prediction 395 413 - -
Amo04g2424 763 MobiDBLite consensus disorder prediction 367 471 - -
Amo04g2424 763 SUPERFAMILY WRKY DNA-binding domain 282 343 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 SUPERFAMILY WRKY DNA-binding domain 491 558 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2424 763 ProSiteProfiles WRKY domain profile. 493 558 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2424 Amo-Chr4 96713801 96717423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2424 28 561 WRKY Transcription Factor Family AT5G56270 40.998 1.34e-94 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g2424 WRKY 1.4e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2424 K18835 - gmx:100800211 991.875