Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2412 ATGGAATTCGATGCTGCAATTCCCATGTCCCGTGAAGGCATCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGTGAAACGATGGAACCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACAGGACTCTGTAGATTCGGAGCAACATGTCGATTTAACCATCCTCCTAACAGGAAACTGGCTATTGCCGCTGCACGGATGAAAGGAGAGTTCCCAGAAAGAATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACAGGAACTTGCAAATTCGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCACTCCGCCCGAATGAGGCGGAATGTGCTTACTATTTAAGAACCGGACAGTGCAAATTTGGGAACACTTGCAAATTCCATCATCCTCAACCAAGTAATATGGTGCTTTCAATGCGCAGTTCTCCTGTTTACCCCACCGTTCATTCTCCAACAACGCCAGGTCAGCAGTCATATGCAGCAGGAATTACAAATTGGTCGAGTTCATCCTACATTGCTAGTCCACGCTGGCAAGGTCCGTCGAGTTATGCATCTTTGATTCTACCTCAGGGAGTGGTTTCGGTACCTGGCTGGGGTGCATACAATGGTCAAATGGGATCAGACAGTACACAACAATCAGTTGGAAATGGTCAAACATATGCATCCTCTCGTCAAGGCGAATCGGCAAATGCAGGATCCCAAGGAGCATATTCTCAATACCGTTCTGGATCAGTTCCTGTAGGTTTCTATGCATTGCAGAGGGAGAACATATTTCCTGAAAGACCTGGCCAGCCTGAATGCCAGTTCTACATGAAGACCGGAGATTGTAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCGCGTGAGAGGCTGATTCCTGCTCCTGATTGTCTTTTGAGTCCAATTGGCCTTCCTTTACGTCCGGGAGAGCCATTGTGTGTCTTTTACTCGCGATATGGTATATGCAAATTCGGCCCGAGTTGCAAGTTCGACCACCCCATGGGAATCTTTGCCTATAATATGTCTACATCACCCTCAGCTGATGCTTCAGGACGACGAATGTTGGGTTCTTCATCAGGAACCGCCGCATTAAATTTATCACCAGAAGGACTTGTTGAGTCAGGCTCTGCGAAGCCAAGGAGGCTTTCGTTGTCGGAGACTAGACAACTTCCTTCCAGTGATGATAACATTGATGATGAGGGATAA 1281 0.4692 MEFDAAIPMSREGIPQDAMWQMNLRSSETMEPGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEAECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVHSPTTPGQQSYAAGITNWSSSSYIASPRWQGPSSYASLILPQGVVSVPGWGAYNGQMGSDSTQQSVGNGQTYASSRQGESANAGSQGAYSQYRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNMSTSPSADASGRRMLGSSSGTAALNLSPEGLVESGSAKPRRLSLSETRQLPSSDDNIDDEG* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2412 426 ProSiteProfiles Zinc finger C3H1-type profile. 332 360 IPR000571 GO:0046872
Amo04g2412 426 MobiDBLite consensus disorder prediction 229 262 - -
Amo04g2412 426 Gene3D - 37 114 - -
Amo04g2412 426 Gene3D - 284 367 - -
Amo04g2412 426 SUPERFAMILY CCCH zinc finger 335 359 IPR036855 GO:0046872
Amo04g2412 426 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Amo04g2412 426 MobiDBLite consensus disorder prediction 373 426 - -
Amo04g2412 426 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 33-RELATED 11 425 - -
Amo04g2412 426 SUPERFAMILY CCCH zinc finger 290 316 IPR036855 GO:0046872
Amo04g2412 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 334 359 IPR000571 GO:0046872
Amo04g2412 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Amo04g2412 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Amo04g2412 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 288 313 IPR000571 GO:0046872
Amo04g2412 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Amo04g2412 426 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Amo04g2412 426 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Amo04g2412 426 Gene3D - 115 164 - -
Amo04g2412 426 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Amo04g2412 426 ProSiteProfiles Zinc finger C3H1-type profile. 286 314 IPR000571 GO:0046872
Amo04g2412 426 SUPERFAMILY CCCH zinc finger 131 157 IPR036855 GO:0046872
Amo04g2412 426 PANTHER PROTEIN PHOSPHATASE RELATED 11 425 - -
Amo04g2412 426 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Amo04g2412 426 MobiDBLite consensus disorder prediction 373 390 - -
Amo04g2412 426 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Amo04g2412 426 SMART c3hfinal6 332 359 IPR000571 GO:0046872
Amo04g2412 426 SMART c3hfinal6 286 313 IPR000571 GO:0046872
Amo04g2412 426 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Amo04g2412 426 SMART c3hfinal6 129 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2412 Amo-Chr4 96564533 96571174 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2412 19 424 C2H2 Transcription Factor Family AT3G02830 63.527 0.0 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo04g2412 zf-CCCH 5.2e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2412 - - gmx:100786261 831.247