Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2352 ATGGAGATGGAGCTTGATTGGGATCTCCATGCGGTGGTTCGAGGCTGCTCCACCCTCACCTCTTCATCTTCATCTTCTTCTTCATCTTCTTCCTCATCCTCTTCTGGTTTCGGTTACTTTCACTCTCAAGCTTCTCCTTCTTCTGTCCTTGACACTGAAGACCAACAACAACAACAACAAGGAATTACCAACAATGTTATGTCCTTTTCTGCTGCTTCATATTCATACCCCTTTGGACCAAGGACCGCCATTGAAGAGTTGCATGAGCTTTGCAAGCCTTTCTTTACAAAATCACTCCCTCAACAACAACAACAACAACAACAATCATTGCAAGCCTCTTCTCCTTTGTCTTCATTCTCTGTAGCACCACCACCACCACCACCACCACCAAAACCTGTTCATGCACAAGAGAAGCAACAGAGAAGCAACACCAACAAGCATCCTCACCCTGGTGGTGATTCTGTCAACACCCCAAGATCTAAAAGAAGGAAGAACCAGCTCAAGAGAGTTTGTCAGGTACCAGTTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGACAGAAACCCATAAAGGGGTCACCATATCCAAGGGGATACTATAGATGTAGCAGCTCAAAGGGATGTTTGGCAAGGAAACAAGTTGAAAGGAACAGAACGGATCCAACAATGTTCATAGTAACCTACACAGCAGAACACAACCACCCTGCTCCAACTCACAGGAACTCCCTTGCCGGATCGACGCGCCAAAAGCCGTTGACACCTCAGGCAGCTGCGGCCACCACCACCAACGGTGGAGAATCCGATGAGAAGGCCTTGACACCAACGAAATCGGCTTCGCCTGATATCTCAGTTGCGGAAGAAGAGGCTTTACCACAACATTGTGAAAAGTCATCAGTGAGCAGAGAAGAGAAGGAAGAGGATTTGGCTGATGATGATGATGATGAGTTTGGTTTATCTGATATGGTGATACCTGATGATTTCTTTGATAGTTTTGATGAACTGAAAGAGATCACTGGTATTGATGATGATGGAATTAGAGGAGATAATTTCTTTGTTGATCCCTTTTCAGCCATTGCTATGCCTTCTTGGGTTGCCAATAGTGCTGCCACTGCTGCTGGTGGTAGCTGA 1137 0.4582 MEMELDWDLHAVVRGCSTLTSSSSSSSSSSSSSSSGFGYFHSQASPSSVLDTEDQQQQQQGITNNVMSFSAASYSYPFGPRTAIEELHELCKPFFTKSLPQQQQQQQQSLQASSPLSSFSVAPPPPPPPPKPVHAQEKQQRSNTNKHPHPGGDSVNTPRSKRRKNQLKRVCQVPVENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNRTDPTMFIVTYTAEHNHPAPTHRNSLAGSTRQKPLTPQAAAATTTNGGESDEKALTPTKSASPDISVAEEEALPQHCEKSSVSREEKEEDLADDDDDEFGLSDMVIPDDFFDSFDELKEITGIDDDGIRGDNFFVDPFSAIAMPSWVANSAATAAGGS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2352 378 Pfam WRKY DNA -binding domain 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2352 378 SMART WRKY_cls 179 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2352 378 SUPERFAMILY WRKY DNA-binding domain 177 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2352 378 MobiDBLite consensus disorder prediction 18 63 - -
Amo04g2352 378 MobiDBLite consensus disorder prediction 98 118 - -
Amo04g2352 378 Gene3D WRKY domain 163 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2352 378 MobiDBLite consensus disorder prediction 236 319 - -
Amo04g2352 378 MobiDBLite consensus disorder prediction 291 307 - -
Amo04g2352 378 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 3 377 - -
Amo04g2352 378 MobiDBLite consensus disorder prediction 98 171 - -
Amo04g2352 378 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 377 IPR044810 GO:0003700
Amo04g2352 378 MobiDBLite consensus disorder prediction 119 134 - -
Amo04g2352 378 ProSiteProfiles WRKY domain profile. 174 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2352 378 MobiDBLite consensus disorder prediction 237 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2352 Amo-Chr4 95754257 95756025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2352 3 377 WRKY Transcription Factor Family AT4G01250 43.617 6.87e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g2352 WRKY 3.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2352 K13425 - gmx:100798084 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2352 04 95754257 95756025 Amo02g0322 02 3938490 3940374 PCT
Amo02g0322 02 3938490 3940374 Amo04g2352 04 95754257 95756025 PCT