Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2348 CTCAATGAAAATTTGGGGTTGCAGGATGAAACTATTGATGAACTTGGTGCAGAGTTCCACAAGAAGTTGGATTTAAAAGATGAGGATGAAAGGATGGTAGTGGAGAATATGGTGATGAGGAATTGGGTGGTGAAGGTGGTTGTGCCCCCGAAAACAGGTGAAGTACAAGGGAGTGATGATAATGATGGTTGGGATGATGATGAGGGTTATGGCTGGAGTAAGAATGTGAAAGAGAGTGAGGTTGATAAGGTAAATGGAGATTTTGATGTTGATGGTGATGGTAATGGTGATGATGAAGTTGAAGTTGAAGGTGATGAAGAAATGGAGAAGAAGAAAGATAGAAACAGTGGTAGAGTTCAACAGCAATATCCACTAAGGCCTGATGCTGAAGATTGTGCTTTCTATTTCAAAACTAGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCTACTTAGTAGGAGGAAGAAC 474 0.3987 LNENLGLQDETIDELGAEFHKKLDLKDEDERMVVENMVMRNWVVKVVVPPKTGEVQGSDDNDGWDDDEGYGWSKNVKESEVDKVNGDFDVDGDGNGDDEVEVEGDEEMEKKKDRNSGRVQQQYPLRPDAEDCAFYFKTRTCKFGFNCKFNHLLSRRKN 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2348 158 Gene3D - 99 156 - -
Amo04g2348 158 MobiDBLite consensus disorder prediction 67 90 - -
Amo04g2348 158 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 130 151 IPR000571 GO:0046872
Amo04g2348 158 MobiDBLite consensus disorder prediction 49 122 - -
Amo04g2348 158 PANTHER PROTEIN PHOSPHATASE RELATED 13 156 - -
Amo04g2348 158 SUPERFAMILY CCCH zinc finger 126 154 IPR036855 GO:0046872
Amo04g2348 158 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 13 156 - -
Amo04g2348 158 ProSiteProfiles Zinc finger C3H1-type profile. 126 154 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2348 Amo-Chr4 95636048 95636558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2348 123 155 C2H2 Transcription Factor Family AT1G29570 45.455 5.09e-07 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo04g2348 zf-CCCH 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2348 - - adu:110280340 177.563