Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2343 ATGGCAACCACTCATTCTCTTCTTCACTCGTCGAGTTCCTCTTTCCTTGCTCAGTTTCGTCCCTTTCCACCTCCACACTCTTCTTCTTCATCATCTTCTGTTCCGTTTTCTCATGGAACAAGGCATGGATTGCTGTCTGTGAAGGCCTCTGATTCTGGTGCTGCGGTGCTCGTTGACAAGTCCGAAGCAGAGACTGTTCATCGTCTCAAAACTACTTACAAAGACAAAATTGTTCCTTTGCTCATGGAGGAGTTCAATTACACCAATATCCACCAGGTGCCGAAGATCGAGAAAATTACAGTTAACTGCGGTATTGGTGATGCTGCACAAAATGCAAAGGGTTTGGAAGCAGCAATGAATGATCTGGCTCTGATCACAGGGCAGAGACCGATTAAGACTCGGGCTAGGGCTTCTGTTGCCACCTTCAAAATCAGGGAAGGTCAACCACTTGGGATAGCCGTGACACTCAGAGGAAAGGTCATGTACAACTTCCTAGACCGAGTTATCAACTTAGGACTTCCTAGGACAAGAGATTTTCAAGGTCTGAACCCCAACAGCTTTGATGGCAATGGGAACTACAGCGTCGGCGTTAAGGACCAGGGTGTGTTCCCGGAGATCAAATACGACGCTGTRGGCAAACCTAGGGGAATGGATATCTGCATCACGACGACGGCTAAAACCGATCAAGAAGCGCAAAAGTTGTTAGTTCTTATGGGCATGCCYTTCAGAGAGGGAGGTGGTCCTGCCTCTACAATGCGCAAGAAGAAGCTCAAGTCTCATCATTTTGATCCAAAAGCAAAGGGAAGAGCAAGGAAGTAA 819 0.4725 MATTHSLLHSSSSSFLAQFRPFPPPHSSSSSSSVPFSHGTRHGLLSVKASDSGAAVLVDKSEAETVHRLKTTYKDKIVPLLMEEFNYTNIHQVPKIEKITVNCGIGDAAQNAKGLEAAMNDLALITGQRPIKTRARASVATFKIREGQPLGIAVTLRGKVMYNFLDRVINLGLPRTRDFQGLNPNSFDGNGNYSVGVKDQGVFPEIKYDAVGKPRGMDICITTTAKTDQEAQKLLVLMGMPFREGGGPASTMRKKKLKSHHFDPKAKGRARK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2343 272 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 63 244 IPR002132 GO:0003735|GO:0005840|GO:0006412
Amo04g2343 272 Gene3D - 60 244 IPR022803 -
Amo04g2343 272 Hamap 50S ribosomal protein L5 [rplE]. 66 244 IPR020930 GO:0003735|GO:0005840|GO:0006412
Amo04g2343 272 MobiDBLite consensus disorder prediction 245 272 - -
Amo04g2343 272 PANTHER 54S RIBOSOMAL PROTEIN L7, MITOCHONDRIAL 63 244 - -
Amo04g2343 272 SUPERFAMILY RL5-like 68 243 IPR022803 -
Amo04g2343 272 Pfam ribosomal L5P family C-terminus 149 242 IPR031309 -
Amo04g2343 272 ProSitePatterns Ribosomal protein L5 signature. 122 138 IPR020929 GO:0003735|GO:0005840|GO:0006412
Amo04g2343 272 Pfam Ribosomal protein L5 89 145 IPR031310 -
Amo04g2343 272 MobiDBLite consensus disorder prediction 253 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2343 Amo-Chr4 95316501 95320108 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2343 95 222 Cytoplasmic Ribosomal Protein Gene Family AT5G45775 27.344 1.36e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2343 K02931 - gmx:100800193 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3495 14 138259215 138262825 Amo04g2343 04 95316501 95320108 hybridization