Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2342 ATGTCAATCTTCGATGGAGCATTCATGGACACAGAGCTCTCAAAGCGAACCTCAATCTTCGGCCTCCGCCTCTGGGTCGTCATCGGAATCCTCGTCGGAGTCCTCATCGTATTTACCCTCTTTCTTCTCTCCCTCTGCCTCACCTCCCGCCGCCACCGCCGCCGCCGAACCGTTGCCGGAAAATATTCATCCGCRGGAGCACCACCAGCCAAGGAGATCCAGGAGATAGTCCACCTCCCTGGACCACACATGCTCCGGCAGCCTCAGGCGCCGGCGCCGGTGCCAGAGATTCACGTTGACTTCGGAAAYGTGGAGCARCGTGTGGTGGTYCACTCTGATAACAACAACAACAGCAACAATAGAGGAGTGTCTAGRGGTGAYAGTAAAGGAACTGTTAGTGGCTGTGAAACGACATCGTCGTTTGGGAGTGGGAGTGTCGTTTTGGGGGTTGGTGGTGGTGGTGTTGGTGTGGGACCTGAGGTTTCTCATCTTGGTTGGGGAAGATGGTACACTTTGAGAGAACTTGAAGCTGCTACTAATGGATTGTGTGAAGAGAATGTGATTGGTGAAGGTGGTTATGGCATTGTTTATTCTGGCGTTCTAAGTGATGGTACCAAAGTTGCTGTCAAGAATCTCTTGAATAACAAGGGCCAAGCTGAGAGAGAATTTAAAGTAGAGGTAGAAGCAATTGGTCGAGTTCGACACAAAAATCTTGTTAGGTTACTTGGCTATTGTGTTGAGGGGGCCTACAGGATGCTTGTGTATGAATATGTGAACAATGGGAATCTAGAACAATGGCTGCATGGGGATGTTGGACCTTTAAGTCCTTTGACATGGGATATACGCATGAACATCATCTTGGGAACTGCAAGAGGATTGGCATATCTTCATGAAGGTCTTGAACCAAAGGTTGTCCACCGGGATGTGAAATCGAGTAATATACTCATTGATCGCCAATGGAACTCTAAGGTTTCTGATTTCGGGCTCGCTAAACTTTTGTGTTCTGAGAATAGCTACYTCACAACTCGAGTGATGGGGACATTTGGTTATGTTGCACCGGAGTATGCRTGCACCGGAATGTTGACCGAAAAGAGTGACGTTTATAGCTTCGGGATACTCATCATGGAGATAATTACCGGGAGGAGTCCTGTCGATTATAGTAGACCACAAGGAGAGGTTAACTTAATAGATTGGTTGAAGACTATGGTTGGGAATAGAAAAGCTGAAGAGGTAGTTGATCCTAAGCTCCCTGAGATGCCAACCTCCAAGGCCCTTAAACGTGCTATATTGATTGCCCTTCGSTGTGTTGACCCTGACGCGACAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAGGCAGATGATCTGTTATTCCAACATGAACGAAAAACTGAGGGAGAATCTTCGCGTTCGCAACGACAAGAGCGCAAGGACTCAGATTTAGATAAGAGGATACCAGATGGAGGGATCACTGATCAAAGTGAAGATGATACTAGTAGAAATCACCAGCAGCATACTAGGTGGAGATGA 1536 0.4733 MSIFDGAFMDTELSKRTSIFGLRLWVVIGILVGVLIVFTLFLLSLCLTSRRHRRRRTVAGKYSSAGAPPAKEIQEIVHLPGPHMLRQPQAPAPVPEIHVDFGNVEQRVVVHSDNNNNSNNRGVSRGDSKGTVSGCETTSSFGSGSVVLGVGGGGVGVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYSGVLSDGTKVAVKNLLNNKGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLEQWLHGDVGPLSPLTWDIRMNIILGTARGLAYLHEGLEPKVVHRDVKSSNILIDRQWNSKVSDFGLAKLLCSENSYXTTRVMGTFGYVAPEYACTGMLTEKSDVYSFGILIMEIITGRSPVDYSRPQGEVNLIDWLKTMVGNRKAEEVVDPKLPEMPTSKALKRAILIALRCVDPDATKRPKMGHVIHMLEADDLLFQHERKTEGESSRSQRQERKDSDLDKRIPDGGITDQSEDDTSRNHQQHTRWR* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2342 511 SMART serkin_6 182 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2342 511 MobiDBLite consensus disorder prediction 110 136 - -
Amo04g2342 511 PANTHER BRASSINOSTEROID INSENSITIVE 1-ASSOCIATED RECEPTOR KINASE 1 501 - -
Amo04g2342 511 Pfam Protein kinase domain 185 451 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2342 511 MobiDBLite consensus disorder prediction 461 511 - -
Amo04g2342 511 ProSitePatterns Protein kinases ATP-binding region signature. 188 210 IPR017441 GO:0005524
Amo04g2342 511 Gene3D Transferase(Phosphotransferase) domain 1 258 471 - -
Amo04g2342 511 CDD STKc_IRAK 188 454 - -
Amo04g2342 511 ProSiteProfiles Protein kinase domain profile. 182 459 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2342 511 SUPERFAMILY Protein kinase-like (PK-like) 161 454 IPR011009 -
Amo04g2342 511 Gene3D Phosphorylase Kinase; domain 1 166 257 - -
Amo04g2342 511 PANTHER OS01G0323000 PROTEIN 1 501 - -
Amo04g2342 511 ProSitePatterns Serine/Threonine protein kinases active-site signature. 304 316 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2342 Amo-Chr4 95300462 95305047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2342 169 510 Trihelix Transcription Factor Family AT5G38560 44.759 5.71e-94 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Amo04g2342 Pkinase 2.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2342 - - gmx:100800724 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2342 04 95300462 95305047 Amo02g0335 02 4083894 4086971 PCT
Amo02g0335 02 4083894 4086971 Amo04g2342 04 95300462 95305047 PCT