Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2338 ATGGAAGATTACGCTGCCAGCAGCGATGATGAATACCGTTACTCCGATCCGGAGGACTCCGTCGACGCCTTCGATAACGATGATAACGATTATCAATTAGTCTCTTCCAAGGGTCCCTCTACTCAGGTGATTACGAAGGAGTCATTGCTAGGTGCACAGAAGGAGGATTTGCGCAAGGTGATGGACATGCTATCGGTGAGGGAGCAACATGCACGTACCCTGCTTATTTTTCATCGTTGGGATGTGGAGAAGTTGTTTGCCGTGTATGTAGATAGGGGAAAACATTTTCTGTTTTCTGAAGCTGGTGTTACAGTGGATGAACATCGCGACTCTAATTCATCAGCTGCTCCTTTGACAATAATGTGCGAAATTTGCATAGAGGATGTTCCTAGTGATGAAACAACAAAAATGGACTGCGGTCACTGTTTTTGCAACGGCTGTTGGACAGAGCATTTTATTGTCAAGATAAATGAGGGTCAAAGTAAGCGCATCAGATGCATGGCACACAAATGTTATTCCATTTGTGATGAAGCTGTTGTCATAACTCTTCTCAGCAAAAAGCACCCTGATATGGCAGAGAAATATGAACGCTTTCTTCTTGAATCCTATATTGAAGACAACAAGAGAGTTAAATGGTGCCCTAGTGCGCCTCATTGTGGGAATGCAATACGCGTTGAGGACGATGAATTATTTGAGGTAGAATGTTCATGTGGTTTACAGTTTTGCTTTAGTTGCTTGTCAGAAGCACATTCCCCATGCTCATGTTTGATGTGGGAGCTTTGGGCCAAAAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACAGTTCATACGAAGCCTTGTCCAAAGTGCCACAAACCGGTCGAGAAAAATGGTGGTTGTAACTTGGTTAGCTGTATCTGTGGTCAAGCTTTTTGTTGGTTGTGTGGTGGAGCTACCGGTCGAGAGCATACCTTGTCAAGCATTGCTGCTCATAGCTGTGGTCGCTATGAAGAGCAAGAAAAAACAGCTGAAAGGGCAAAGAGGGATCTGTATCGTTATATGCATTATCATAATCGTTACAAAGCTCACACAGATTCCTTTAAGCTTGAGAGTAAACTGAAGGAGACTATACAAAAGAAGATTGCTGTCTCAGAAGAAAAACATTCTACGCTAAGGGATTATAGTTGGGTAAATAATGGGCTCTCTAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATGCATTTGCGTTTTACATGTTTGGTGACGAYCTATTTAAGGAAGAAATGACAGAAGCTCAAAGGGAAATAAAACAGAATTTGTTTGAGGATCAGCAGCAGCAGCTTGAGGCAAACGTTGAAAAGCTCTCCAAAATTTTGGYGGAACGTTTTCAAACTTTTAAATATGATAAAGTCATGGAGATAAGGATGCAGATAATCAATCTGACCACTATCATTGACAAACTTTGTCAAAAAATGTATGAGGGTATTGAGAATGATTTACTGGGTTCTCTCCATATTGGTGTTCACAACATTGCTCCATACAAGTCAAAGGGGATCGACAAGGCATCAGAACTTTCAGTTCACAACATTGCTCTATAA 1590 0.4138 MEDYAASSDDEYRYSDPEDSVDAFDNDDNDYQLVSSKGPSTQVITKESLLGAQKEDLRKVMDMLSVREQHARTLLIFHRWDVEKLFAVYVDRGKHFLFSEAGVTVDEHRDSNSSAAPLTIMCEICIEDVPSDETTKMDCGHCFCNGCWTEHFIVKINEGQSKRIRCMAHKCYSICDEAVVITLLSKKHPDMAEKYERFLLESYIEDNKRVKWCPSAPHCGNAIRVEDDELFEVECSCGLQFCFSCLSEAHSPCSCLMWELWAKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTLSSIAAHSCGRYEEQEKTAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKETIQKKIAVSEEKHSTLRDYSWVNNGLSRLFRSRRVLSYSYAFAFYMFGDDLFKEEMTEAQREIKQNLFEDQQQQLEANVEKLSKILXERFQTFKYDKVMEIRMQIINLTTIIDKLCQKMYEGIENDLLGSLHIGVHNIAPYKSKGIDKASELSVHNIAL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2338 529 ProSiteProfiles Zinc finger RING-type profile. 122 170 IPR001841 -
Amo04g2338 529 SUPERFAMILY RING/U-box 193 261 - -
Amo04g2338 529 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 207 IPR013083 -
Amo04g2338 529 SUPERFAMILY RING/U-box 120 205 - -
Amo04g2338 529 ProSiteProfiles TRIAD supradomain profile. 118 332 IPR044066 -
Amo04g2338 529 Pfam IBR domain, a half RING-finger domain 193 255 IPR002867 -
Amo04g2338 529 MobiDBLite consensus disorder prediction 1 32 - -
Amo04g2338 529 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 503 IPR031127 GO:0004842|GO:0016567
Amo04g2338 529 Gene3D - 251 498 - -
Amo04g2338 529 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 503 - -
Amo04g2338 529 Pfam Ariadne domain 332 525 IPR045840 -
Amo04g2338 529 SUPERFAMILY RING/U-box 274 315 - -
Amo04g2338 529 SMART ibrneu5 263 328 IPR002867 -
Amo04g2338 529 SMART ibrneu5 193 255 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2338 Amo-Chr4 95233056 95234645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2338 61 522 ARIADNE family AT2G16090 71.613 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2338 K11968 - gmx:100783343 927.161