Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2332 ATGCTGCCTATCGTGGAAGAGCTCCGAGATATTCCGGAGCCCTTCCACGAAAACGGCATCGTTTGGTTGAAGAAACTTAGGGATGCACTCTTGTTTGCCAAGGAACTCTTGAGGTTATGTAGCCAAGGAAGCAAAATTCTCCTTGCAATGGAGACGGAGGCATATATGATAAAATTTCAAGGTGTTTATGAGAAATTGAGTCAAGCATTTGAAGATGTGCCTTGTGAGGAATTAGGAATCTCAGATGAAGTCAGAGAACAGATTGAGCTAATGCACACTCAGCTCAAGCGGGCGAGGAGGAGGACGGATACACAGGACATGGAGCTTGCAATGGATATGATGGTGGTGTTATCCGGCGATGAGCAACGGAGCGCCGACAGTGCCATCATTGAGAGGCTAGCAAAGAAATTAGAGCTTCAAAGGGTTGAGGATCTTAAGATAGAAACCTTGGCGATCAAGCAACTGGCTGATGAAAGAAAAGGGCAACAAGTAGATAGCACCAAGAAAATAATTGGCCTCCTTAACAAGTTYAAGAGAATTGCTGGCATGGAAGAAACAAGTGTTCTTGATGATCCTGTCCTGCCTAGGGTGCTTGTGAAGAGCATATCTTTGGTTATTCCTCATGAGTTTCTTTGTCCTATAACCCTTGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGTGAAATGGTTTGAATCCAAACATAATACCTGTCCAAAGACAAGGCAAACCCTTGATCACTTGCAACTAGCACCAAATTGTGCCTTAAAGAGCATAATTGAAGAATGGTGTGAGAAAAACCACTTCAAACTACCAAAGAACCCCGAGAATCGGATATTGATTGCTGAGCATGGAGGAATACCACCATTGATACAAATCTTATCTTATCCGGATTCAAAGATTCAAGAACATGCTGTGACAGCATTGTTGAATCTTTCKATTGATGAGAAGAACAAGAGGCTAATATCAAAAGAAGGTGCTATTCCAGCAATCATAGAAGTTTTGGAGAATGGSAGCATTGTTGCTAAGGAAAATTCAGCAGCATGTTTGTTTAGTCTCTCAATGCTTGATGAGAACAAAGAACTTGTGGGATTGTCAAATGGGATTCCACCATTGGTGAAACTTTTGAGGAATGGAACAGTTAGAGGGAAAAAAGATGCTATTACAGCACTTTTTAATTTGTCCCTTAACCATGCAAATAAAAGCAGGGCGATTAGTGCTGGTATTGTCGCACCTTTGCTTCAGTTGCTTAAGGACACAAAAACAAACATGATTGACGAGGCTCTATCCATTCTGTTACTGCTCTCCTCGATTTCCGAGGGGAGACAGGAGATTGGACAGCTGTCATTTATCGAGACACTTGTTGAGTTCATTAAGGATGGGACCCCCAAGAACAAGGAGTGTGCTGCTTCTGTGCTCCTGGAGTTGTGTACAAATAACTACTCTTATATACTTGCAGCACTTCAGTATGGAGTTTATGAGCATTTGATTCAGATCAAAGGGAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTCTCTTAGATCTTATAAGTAGGAGTGAGCAAATTTAG 1602 0.417 MLPIVEELRDIPEPFHENGIVWLKKLRDALLFAKELLRLCSQGSKILLAMETEAYMIKFQGVYEKLSQAFEDVPCEELGISDEVREQIELMHTQLKRARRRTDTQDMELAMDMMVVLSGDEQRSADSAIIERLAKKLELQRVEDLKIETLAIKQLADERKGQQVDSTKKIIGLLNKFKRIAGMEETSVLDDPVLPRVLVKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIVKWFESKHNTCPKTRQTLDHLQLAPNCALKSIIEEWCEKNHFKLPKNPENRILIAEHGGIPPLIQILSYPDSKIQEHAVTALLNLSIDEKNKRLISKEGAIPAIIEVLENGSIVAKENSAACLFSLSMLDENKELVGLSNGIPPLVKLLRNGTVRGKKDAITALFNLSLNHANKSRAISAGIVAPLLQLLKDTKTNMIDEALSILLLLSSISEGRQEIGQLSFIETLVEFIKDGTPKNKECAASVLLELCTNNYSYILAALQYGVYEHLIQIKGSGTNRAQRKANALLDLISRSEQI* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2332 533 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 283 531 - -
Amo04g2332 533 Coils Coil 81 101 - -
Amo04g2332 533 CDD RING-Ubox_PUB 210 252 IPR045210 -
Amo04g2332 533 PANTHER U BOX DOMAIN-CONTAINING 1 282 - -
Amo04g2332 533 SMART arm_5 365 405 IPR000225 GO:0005515
Amo04g2332 533 SMART arm_5 447 487 IPR000225 GO:0005515
Amo04g2332 533 SMART arm_5 406 446 IPR000225 GO:0005515
Amo04g2332 533 SMART arm_5 283 323 IPR000225 GO:0005515
Amo04g2332 533 SMART arm_5 324 364 IPR000225 GO:0005515
Amo04g2332 533 Pfam U-box domain 206 276 IPR003613 GO:0004842|GO:0016567
Amo04g2332 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 336 IPR000225 GO:0005515
Amo04g2332 533 PANTHER U BOX DOMAIN-CONTAINING 283 531 - -
Amo04g2332 533 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 15 1 282 - -
Amo04g2332 533 ProSiteProfiles U-box domain profile. 205 279 IPR003613 GO:0004842|GO:0016567
Amo04g2332 533 Pfam Armadillo/beta-catenin-like repeat 283 322 IPR000225 GO:0005515
Amo04g2332 533 Pfam Armadillo/beta-catenin-like repeat 366 404 IPR000225 GO:0005515
Amo04g2332 533 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 376 418 IPR000225 GO:0005515
Amo04g2332 533 SMART Ubox_2 209 272 IPR003613 GO:0004842|GO:0016567
Amo04g2332 533 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 206 278 IPR013083 -
Amo04g2332 533 Gene3D - 279 532 IPR011989 -
Amo04g2332 533 SUPERFAMILY RING/U-box 205 281 - -
Amo04g2332 533 SUPERFAMILY ARM repeat 281 529 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2332 Amo-Chr4 95100384 95103214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2332 1 533 U-box Gene Family AT5G42340 60.417 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2332 - - adu:107485837 998.038