Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2329 ATGGCATCCGCCTCTTCTTCCGCATCAATCCCACCACCAAGATCATGCACCTATCACGTGTTCTTGAGTTTCAGAGGAGAAGACACTCGCACAGGCTTCACTAGCCATCTCTATGCGGCCCTCAACAGTAAGGGAATCACAACCTACAAAGATGACAAAAACCTTCGCAAAGGCGATGTTATTTCAAAAGAACTCCTCAAAGCAATTGAAGAATCGATGTTTGCAGTCATTGTTTTTTCACCGAACTACGCTTACTCCAGTTGGTGCTTGGATGAGCTCCAAAAAATCATGGAGTGCAACAAGAAGGTGGGGCAACACATCGTGCCGGTGTTCTACGGTGTGGAGCCTTGTGATGTGAGGCACCAAAGAGGAACCTTTGAGGAAGCTTTCAAGAAACACGAAWAGAGACATGACAGTGAGAAGGTCAAGAGATGGAGAGATGCGCTAACACAAGTAGCTGCTCATTCTGGTTGGACCTCCAAAAATGAGGACGAAGCAGTACTTGTGGAAAATATTGCTCAGCATATATTTGAAATATTGATTACTAAGTTGCCATCTTCAATGAAGAATCTTGTGGGGATTGAATCAAGAGTGAAACAAGTGATTACTCTCATAGGCCTTGGATTGAATGATGTTCGCTTTATAGGCATATGGGGAATGGGCGGCATGGGTAAGACCACTATTGCTAGAGCAGTCTTTGAAATCATTCGAAGCAGATTTGAAGTTACTTGCTTTCTTGCCGACGTAAGAGAACACTGCGAGAAAAAAGATATTACTCACATACAAAAGCAACTTCTCGATCAAATGAAAATAAATTCAAATTCTGTTCATAACAAGTATGATGGGAGGACAATAATTCAAAACTATTTACGTCTCAAAAGGGTACTTCTTGTTCTTGATGATGTAAATCATGGAAAACAATTAGAATATTTGGCTGGGGAGCAAGCTTGGTTTGGTCCTGGAAGCAGAATAATAATCACAACTAGAGACTTAAAGGTGCTAAAGGAACAAGAGGTGCATGAAACTTATAAGGTTGAAGAGTTAGTGGAAAGTGAAGCCCTTAACCTCTTTTGTCTGAAAGCCTTTAAACAGCAGGAGCCTACAGAAGGGTTTTTGGATTTGTCTGAAGAAGTGGTCAAGTACAGTGGTGGTCTTCCATTGGCACTTAAAGTATTGGGTTCCTATCTTTATGGTAGACCTATTGCGGTTTGGCATAGTGCTATAGAAAAAATAAAGAAGTCTTCACATTCTGAAATTATTGATACTTTGAAAATAAGCTATGAGGGTTTAGATGATATGGAAAAGAATATTTTTCTAGATATTGCTTGTTTTTTTAAAGGAGATCCGCAATATTATGTAAGAAAGATATTAGAAGAATGTGGTTATCAGGCTAAAATTGGTCTTGATAGTTTGATTAACAGATCATTGGTAACTATAAATAAATATGATGAATTGGGGATGCATGATCTGCTTGAAGAAATGGGCAAACAAATTGTAATTCAGGAATCTCCGAATGATGCTTGTAAGCGTAGCAGGTTGTGGTGTTTGGAGGATGTTGAGTTTGTACTTACTCAAAAGAAGAAAACTAAAGCAACTCATGGCATCGTTCTACGTAAGTGGAATAGCAAGACTGAAGTGAATCTATCTTTCTCAAAAATGTGCCAGTTAAAGCTTCTCATTTTAGATGGCGTGAATGCTCCCATTCTCTGCGATATTCCTTGTACATTAAAGGTATTTCGCTGGAGTTATTGTCCACTGAAAACTCTTCCCCTTACAGATCATCAACGCTATGAACTTGTTGAAATTGATCTGCCTTGGAGCAAAATTGTACGGTTATGGGATGGAAAGAAGGTTTTAGAAAAGTTAGAGCACTTGGATCTGTCACGGTGCAAGCAGCTGAAGCAAACGCCAGATCTTATTGGGGCTCCCTATCTTAAAAAACTTAATCTTTGTGAATGCAAGGAGCTGGATTATATTCACCCGTCTCTCGCACACCACAAGAGGCTTGTTGAATTGGAGTTAAGGGAATGTGAAAGTCTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCGAGATACTAAATCTAAGCTGGTGCAATAGTTTGAGAAGATTGCCAGATCTTTCTGGGGCTCCCAATCTTAAAAAACTTAATCTTCAGGGATGCGAGAAGCTGGATTATATTCACCCGTCTCTCGCACACCACAAGAGGCTTGTTGAATTGGATTTAAGTGGATGTAAGAGTCTCGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCGAGAAACTAGATCTACGCTGGTGCAGTAGTTTGAGAAGACTGCCAGAATTTGGGGAATGCATGAAACAGTTATCGATTCTTGATCTGGAAGGTACAGGTATAGAAGAGCTACTCCCAACGCTTGGCAATTTGGCTGGCGTGTCTAAGTTGGACTTAACTGGATGCCACAAGTTTACTGGTCTTCCCTTATCACTTGGATGTTTCGTTGGCCTTAAAAGGTTGGTGTTAAGTAGATTCGTGGAGCTTAGTTGTCTTCCTCACAAAACTCATGGGTTAGAGTCCCTCAGAGTCAGAGCTGATTATGATGATTCTGACAGCTCATCTAGAGAAGAGTCGACCCTTTCCTATGATATTGCCCACTTAGCCTCGTTGACGCATTTGGATTTATCTCACAGCAGTTTTTTAAGAGTTCCAATAACTATCCATCAACTTACCAGACTTAAATGTCTGAACGTAAGCTGTTGCGATGAATTGGAGGTTTTACCAGAGCTTCCATCAAGTCTACGAGAATTAGACGCACAGGGTTGTGATTCACTGGATGCATCGAATGTTGATGATGTTATATCAAAGGCGTGTTGTGGCTTTGCAGAATCAGCTAGCCAAGATCGTCAAGACTTCTTGCAAATGTTGATCACACGGGAGGAAATTCCAGCATGGTTTGAGCATCAGGAAGAAGATGACGGAGTATCAGTGTCATTCCCGCAGAATTGCCCTTCAATTGAAACCATCGCACTTGCTCTCTGTTTCCTAATTGAAATTGAAGAAGATATTGACTCAATAAAGCCATCGGTGATCTGCAACGGTAAAGAATTCATCAACGCGAGTTTACACGTGGCGTCTAGTGGAGATTCTTTGTTCATTGTGTGCGTGAACGGTTACTATTTTAGTAAGCGCCAACACAATCGCTTCCAATTGTTATTTCCAGATGATGACGATCTTGATGATGATATCCGAGTAAAGAGATGCGGAGCACGTTGGGTGTGCAAGCAAGACATTCAAGATTTCAAGAAAAGAAAATCCCAAACAGGGAAAAGAAAAGCAACTCTTGAACTGAACATGGACATGATTTTACATTCTTCAGCTTCTACAAATAAGATGCTCGTGGTTGACTCTCCAGTCTATGAACAAGAGATAGAGCCAGCCGCCACAGCGGAGGGCGCTATTAGCCATTTGGCATCTGGCAAAAGCTCTGACCCACCTCAACTCTTGCCTCTCTTCCCTTTGCATCCCAGTTCTCATAGCTCATGA 3534 0.4109 MASASSSASIPPPRSCTYHVFLSFRGEDTRTGFTSHLYAALNSKGITTYKDDKNLRKGDVISKELLKAIEESMFAVIVFSPNYAYSSWCLDELQKIMECNKKVGQHIVPVFYGVEPCDVRHQRGTFEEAFKKHEXRHDSEKVKRWRDALTQVAAHSGWTSKNEDEAVLVENIAQHIFEILITKLPSSMKNLVGIESRVKQVITLIGLGLNDVRFIGIWGMGGMGKTTIARAVFEIIRSRFEVTCFLADVREHCEKKDITHIQKQLLDQMKINSNSVHNKYDGRTIIQNYLRLKRVLLVLDDVNHGKQLEYLAGEQAWFGPGSRIIITTRDLKVLKEQEVHETYKVEELVESEALNLFCLKAFKQQEPTEGFLDLSEEVVKYSGGLPLALKVLGSYLYGRPIAVWHSAIEKIKKSSHSEIIDTLKISYEGLDDMEKNIFLDIACFFKGDPQYYVRKILEECGYQAKIGLDSLINRSLVTINKYDELGMHDLLEEMGKQIVIQESPNDACKRSRLWCLEDVEFVLTQKKKTKATHGIVLRKWNSKTEVNLSFSKMCQLKLLILDGVNAPILCDIPCTLKVFRWSYCPLKTLPLTDHQRYELVEIDLPWSKIVRLWDGKKVLEKLEHLDLSRCKQLKQTPDLIGAPYLKKLNLCECKELDYIHPSLAHHKRLVELELRECESLETLGDKLEMSSLEILNLSWCNSLRRLPDLSGAPNLKKLNLQGCEKLDYIHPSLAHHKRLVELDLSGCKSLETLGDKLEMSSLEKLDLRWCSSLRRLPEFGECMKQLSILDLEGTGIEELLPTLGNLAGVSKLDLTGCHKFTGLPLSLGCFVGLKRLVLSRFVELSCLPHKTHGLESLRVRADYDDSDSSSREESTLSYDIAHLASLTHLDLSHSSFLRVPITIHQLTRLKCLNVSCCDELEVLPELPSSLRELDAQGCDSLDASNVDDVISKACCGFAESASQDRQDFLQMLITREEIPAWFEHQEEDDGVSVSFPQNCPSIETIALALCFLIEIEEDIDSIKPSVICNGKEFINASLHVASSGDSLFIVCVNGYYFSKRQHNRFQLLFPDDDDLDDDIRVKRCGARWVCKQDIQDFKKRKSQTGKRKATLELNMDMILHSSASTNKMLVVDSPVYEQEIEPAATAEGAISHLASGKSSDPPQLLPLFPLHPSSHSS* 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2329 1177 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 704 IPR044974 GO:0006952
Amo04g2329 1177 Gene3D - 347 431 IPR042197 -
Amo04g2329 1177 Pfam C-JID domain 975 1094 IPR045344 -
Amo04g2329 1177 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 441 IPR027417 -
Amo04g2329 1177 SUPERFAMILY L domain-like 487 858 - -
Amo04g2329 1177 Pfam TIR domain 18 191 IPR000157 GO:0007165
Amo04g2329 1177 SUPERFAMILY RNI-like 873 1011 - -
Amo04g2329 1177 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 158 IPR035897 -
Amo04g2329 1177 MobiDBLite consensus disorder prediction 1152 1177 - -
Amo04g2329 1177 ProSiteProfiles Leucine-rich repeat profile. 691 713 IPR001611 GO:0005515
Amo04g2329 1177 ProSiteProfiles TIR domain profile. 16 180 IPR000157 GO:0007165
Amo04g2329 1177 Pfam NB-ARC domain 211 422 IPR002182 GO:0043531
Amo04g2329 1177 Gene3D - 182 344 IPR027417 -
Amo04g2329 1177 Gene3D Ribonuclease Inhibitor 865 959 IPR032675 -
Amo04g2329 1177 Gene3D Ribonuclease Inhibitor 689 756 IPR032675 -
Amo04g2329 1177 Gene3D Ribonuclease Inhibitor 757 861 IPR032675 -
Amo04g2329 1177 Gene3D Ribonuclease Inhibitor 535 688 IPR032675 -
Amo04g2329 1177 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 706 989 IPR044974 GO:0006952
Amo04g2329 1177 Gene3D - 15 181 IPR035897 -
Amo04g2329 1177 PRINTS Disease resistance protein signature 289 303 - -
Amo04g2329 1177 PRINTS Disease resistance protein signature 214 229 - -
Amo04g2329 1177 PRINTS Disease resistance protein signature 382 396 - -
Amo04g2329 1177 PRINTS Disease resistance protein signature 617 633 - -
Amo04g2329 1177 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 706 989 - -
Amo04g2329 1177 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 704 - -
Amo04g2329 1177 SMART till_3 17 155 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2329 Amo-Chr4 95062407 95067192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2329 11 812 WRKY Transcription Factor Family AT4G12020 31.235 5.62e-99 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2329 - - ahf:112744160 1719.13