LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g2323	ATGGCATCCGGGTCCTCTTCTGGAATTCCACCACCAACAAGAGCATGCACCTATCACGTGTTCTTGAGTTTTAGGGGTGAAGACACTCGCGGACGATTCACTAGCCATCTCTATGACGCCCTCAACAGAAAGGGAATCACAACCTACAGAGATGATAACAACCTTCGCAAGGGCGATGTTATTTCAGATGAACTCCTCAAAGCAATTGAAGAGTCTATGTTTGCAGTCATAGTTCTGTCTCCAAACTACGCTTCATCCACATGGTGCTTGGATGAGCTCTGCAAGATCCTTGATTGCAAGAACAAGCTGGGACTACAGATGGTGGCAGTGTTCTACAGTGTGGAACCTTCTGTTGTGAGGCACCAAATAGGAACCTTTCAGGAAGCTTTCAAGAAGCATGAACAGAGACACGAGCGTGAGAAGGTTCAAAGATGGAGGGAAGCGTTAAAACAAGTTGCTGATTATTCTGGATGGAGCTCCAAGAATCAGGACGAGGCAGCACTTGTCGAGAATATTGCTCAACATATATTTGAAATATTGATTCCCAAGTTGCCATCGTCAATGAAAAATCTTGTGGGGATTGAATCAAGAGTGGAACAAGTGATTAGCCGAATAGGCCTTGGATCGAATGATGTTCGCTATATAAACATATGGGGAATGGGCGGCATAGGTAAGACAACTATTGCTAGAATAGTCTTTGAAACTATTCGAAGTATATTTAAAGTTGCTTGCTTTCTTGCCGACGTAAGGGAGCAATGTGAGAAAAAAGATATTGTCCACATACAAAAGCAACTTCTTGATCAAATGGGTATTAATTCAGCTGCTGTTTTTAGCGAGTATGATGGGAGAACAATAATTCAAAACTCTTTACGCCTCAAAAAGGTACTTCTTGTTCTTGATGATGTAAATGAAGAAAAACAATTAGAGAATTTGGCTGGGGAGCAAGCTTGGTTTGGTCCTGGAAGCAGAATAATAATTACAACTAGAGACGTTGAGGTGCTAAAGGAACCGCATGAAACTTGGAAAGTTAAAGGGTTAGTGGATAGTGAAGCCTTTAATCTCTTTTGTCTGAAAGCTTTTAAACAAGCAGAACCTGCAGAAGGGTTTTTGGATTTGTCCCAAGAAGTGATCAAGTACAGTGGTGGTCTTCCATTGGCACTTAAAGTATTGGGTTCCTATCTTAATGGTAGACCTATTGCGGTTTGGCATAGTGCTATTGAAAAGATAAAGAAGTCTTCACATTCTGACATTATTGATGTATTAAAAATAAGCTATGATGGTTTAGATTCTATGGAAAAGGATATTTTTCTAGATATTGCTTGTTTCTTTAAAGGACATCCGCAAGATTATGTAAGAAAGATATTAGAAGGATGTGGTCATCATGCTGTAATTGGTCTTGATATTTTGATTAATAGATCATTGGTCACTATAAACGAATATGATAGTTTGGGGATGCATGATCTGCTTGAAGAAATGGGCAAACTTATTGTAATTCAAGAATCTCCAAATGATGCTAGTAAGCGTAGCAGATTGTGGTGTTACGAGGATGTTGATTTTGTACTTACTCAAAAGAAGGTTTTGCACTGGACAGATTGTCCGATGGAAACTCTGCCCTTTACAGATCATCAACGCTATGAACTTGTCGAAATTGATCTGTCTCATAGTAAAATTGTACAGTTATGGGATGGAAAGAAGGTTCTAAAAAAGTTAGTGCACTTGAATCTCTCCTACTGCAAGGAGCTGAAGGAAATGCCAGATCTTTCTGGGGCTCCCAATCTTAAAACGCTTGATCTTGATGGATGTGAGGAGCTGAATTATTTTCACCCATCTCTGGCACACCACAAGAGCCTTGTTGAATTGAATTTAAGTGGATGTGAGAGTCTTGAAACACTTGGAGATAAATTGGAGATGAGTTCACTCGAGAGACTAGATCTAAAATGTTGCAGTAGTTTGAGAAGACTGCCAGAATTTGGAAAATGCATGAAACAGTTGTCGATTCTTATTTTAAAACGTACAGAGTCCCTCACAGTTAAGGATTATTTTGGCAGCCCAAATATTGTTGGACTTTTGTGTTCTCTCTCTCACTTGACCTCTTTGAGTAGCCTGAAATTACAAGGATGTTTTAGCACATCTAGAGAAGACTCGACCGTTCACTACGATTTTGGCCGCTTAGCGTCCTTGACAGATTTGGATTTATCGGAGAACAATTTTTTAAGGGTTCCAATAAGTATCCATGAACTTCCCAGACTTACACGTCTAAAGCTAAATAATTGCCGTCGCTTGAAGGTTTTGCCAGAGCTTCCATTAAGTCTAAGAGAACTACAAGCACGGGATTGTGATTCACTGGATGCATCCAATGCGAATGATGTTATATTAAAGGCGTGTTGTAGCTTTGCAGAATCAGCTAGTCAAGATCGTGAAGACCTCTTTCAAATGTGGTTTAGTAGGAAGAAAATTCCAGCATGGTTTGAGCATCACGAAGAAGGTAACGGAGTATCAGTCTCATTCTCGCATAATTGCCCTTCAACTGAAACCATCGCACTTGCTCTCTGCTTCCTATTACAAGGTATTTTGTTCTCATCGGAAAAACCATCGGTGATCTGCAAAGGTAAAGAATTCATCAACAAGAGTTTGTTGAAGGCGTCGTCGGGTATATCTTCTGAGAATGTGTACATTGTCTACGTGAACGGTTACTATCTTAGTAAGCTGTTATGCCAACACAATTGCTTCCAAATGCTATTTCCCGGTACTCCTAGTATTAATATCCAAGTACGGAGATCTGGTGCACGTTGGCAGCAACACGAGAGATTTGGCAAGCATGACAAGACAGATTCAGATTCATTACAGAGTGAAGGAGAAAATCTGCACGCCATATTCTGTGGGCTATATGTCTTTGACGGCGCCGGATTCAATACTCCTAAAAGGTTTGGAGTATTAAAACTCTTTTAA	2949	0.4018	MASGSSSGIPPPTRACTYHVFLSFRGEDTRGRFTSHLYDALNRKGITTYRDDNNLRKGDVISDELLKAIEESMFAVIVLSPNYASSTWCLDELCKILDCKNKLGLQMVAVFYSVEPSVVRHQIGTFQEAFKKHEQRHEREKVQRWREALKQVADYSGWSSKNQDEAALVENIAQHIFEILIPKLPSSMKNLVGIESRVEQVISRIGLGSNDVRYINIWGMGGIGKTTIARIVFETIRSIFKVACFLADVREQCEKKDIVHIQKQLLDQMGINSAAVFSEYDGRTIIQNSLRLKKVLLVLDDVNEEKQLENLAGEQAWFGPGSRIIITTRDVEVLKEPHETWKVKGLVDSEAFNLFCLKAFKQAEPAEGFLDLSQEVIKYSGGLPLALKVLGSYLNGRPIAVWHSAIEKIKKSSHSDIIDVLKISYDGLDSMEKDIFLDIACFFKGHPQDYVRKILEGCGHHAVIGLDILINRSLVTINEYDSLGMHDLLEEMGKLIVIQESPNDASKRSRLWCYEDVDFVLTQKKVLHWTDCPMETLPFTDHQRYELVEIDLSHSKIVQLWDGKKVLKKLVHLNLSYCKELKEMPDLSGAPNLKTLDLDGCEELNYFHPSLAHHKSLVELNLSGCESLETLGDKLEMSSLERLDLKCCSSLRRLPEFGKCMKQLSILILKRTESLTVKDYFGSPNIVGLLCSLSHLTSLSSLKLQGCFSTSREDSTVHYDFGRLASLTDLDLSENNFLRVPISIHELPRLTRLKLNNCRRLKVLPELPLSLRELQARDCDSLDASNANDVILKACCSFAESASQDREDLFQMWFSRKKIPAWFEHHEEGNGVSVSFSHNCPSTETIALALCFLLQGILFSSEKPSVICKGKEFINKSLLKASSGISSENVYIVYVNGYYLSKLLCQHNCFQMLFPGTPSINIQVRRSGARWQQHERFGKHDKTDSDSLQSEGENLHAIFCGLYVFDGAGFNTPKRFGVLKLF*	983

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g2323	982	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	158	IPR035897	-
	Amo04g2323	982	ProSiteProfiles	TIR domain profile.	16	180	IPR000157	GO:0007165
	Amo04g2323	982	Gene3D	-	346	429	IPR042197	-
	Amo04g2323	982	Gene3D	-	181	342	IPR027417	-
	Amo04g2323	982	Pfam	NB-ARC domain	195	425	IPR002182	GO:0043531
	Amo04g2323	982	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	523	857	IPR044974	GO:0006952
	Amo04g2323	982	SMART	till_3	17	155	IPR000157	GO:0007165
	Amo04g2323	982	Gene3D	Ribonuclease Inhibitor	501	800	IPR032675	-
	Amo04g2323	982	SUPERFAMILY	L domain-like	485	779	-	-
	Amo04g2323	982	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	439	IPR027417	-
	Amo04g2323	982	Gene3D	-	15	180	IPR035897	-
	Amo04g2323	982	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	525	IPR044974	GO:0006952
	Amo04g2323	982	Pfam	TIR domain	18	192	IPR000157	GO:0007165
	Amo04g2323	982	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	523	857	-	-
	Amo04g2323	982	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	16	525	-	-
	Amo04g2323	982	PRINTS	Disease resistance protein signature	289	303	-	-
	Amo04g2323	982	PRINTS	Disease resistance protein signature	380	394	-	-
	Amo04g2323	982	PRINTS	Disease resistance protein signature	635	651	-	-
	Amo04g2323	982	PRINTS	Disease resistance protein signature	214	229	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g2323	Amo-Chr4	94977356	94982855	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g2323	192	778	WRKY Transcription Factor Family	AT5G45050	29.134	4.71e-60	222

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g2323	-		-	adu:107485881	1147.88