Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2320 GTTTTGCCAGAGCTTCCATCAAGTCTAAGAGAATTACGCGCACGGGGTTGTGATTCACTGGTTGCATCCAATGTGAATGATGTTGTATCAAAGGCGTGTTATGGCTTTGCAGAATCATCGAGCCAAGATCGTGAAGACGTCTTGCAAATGTTGATCCATGGGAAGGAAATTCCAGCATGGTTTGAGCATCAGGAACAAGACAACGGTGTTTCAGTCTCATTCCCGCTTAATTGCCCTGCACCTGAATCCATCGCACTTTCTCTCTGTTTCCTATTACAAGCTATATTTTTTCAATTTGAGACATCTTTCCTTTCCAACTATGTCAAGGTCCAGCTTTCAGACAAAAGAATACACATTGGTCCAGCTTTCAATCAAGTTCATCTTGAATTGTTATCAGAGGATTTGTCAGTCCAGGATATAGCTTCAAATTACAGAGGCAGTTGGATACTTACTTTCTCCTTGCTCACATGTGCTCTGTTCAAGCTTAAAGAATGGATACTTGTCCTGCTTACTCTGTTAAGAAGTTCTGAGGTGCTTTTTGACTTATTCCATCATGATGTTCGGCTGTGGAAAGCATACAGCACCATGCTGCAGCCTGCAGATTTCATCTTTGCTTGGTATACATGTTTTCTTGCTGACAAAGTTATATGCCCGAGTGGGTTTCTTCACCTTGATCTGCTTGAAAGCTCCGATGGATTATATCTCAAACATAAATGGCCCATGCATTCCTTTATTATACTTGATTGTGGTAGAGTCTCTTCTAGTCCATTCCTACCACCACGATCATGGACATATCATGTGTTCTTGAGTTTTAGGGGACAAGACACCCGCAAAGGATTCACTGATCATCTCTATGCTTCACTGCAGAGGAAGGGAATCACGACTTTTAGAGATGACATGAACCTTGAGAGAGGTGAAGTTATTTCACATGAACTTCTCAGAGCAATTGAAGAGTCTATGTTTGCAGTCGTTGTTCTGTCGCCAAACTATGCTTCCTCTCCTTGGTGCTTAGATGAGCTCCAAAAGATTGTTGAGTGCAAGAACAACCTGGGGCTACAGATTGTGCCAGTGTTCTACGGTGTGGACCCTTGTGATGTGAGGCACCAAAAAGGAACCTTTGAGGATGCTTTCAGGAAACAAGAAGAGAGATTTGGAGGAGACAGTGAGAAGGTCAAGAGATGGAGAGATGCCTTAATACAAGTTGCCAGTTACTCTGGATGGGACTCCAAAAATCAGCATGAGGCAACACTTGTGGAAAGCATTGCTCAACATGTGCATACAAGGCTAATTCCAAAATTGCCATCTTGCATAGAGAGCCTTTTTGGTATGGCTTCAAGGGTGGAGGATGTAACTACACTCATGTGTATTGGGTTGAGTGATGTTCGATTTACAGGCATATGGGGCATGGGTGGTGTTGGTAAGACAACTATTGCTAGAGCAATCTATGAAGCCATTGAAGATCAATTTCAAATTAGTTGTTTTCTTGCTAATATTAGAGAGACATGTGAGACAAATGGGATACTTCAACTACAAAAAATTCTTGGTGAACATATTCATGTGAGTAGATGTACTTTCAGTAATTTGTATGATGGAATGAGGATCATAAGAAATTCTTTATGCAACAAGAAGGTTCTTATTGTTCTTGACGATGTGAATGATGTAAGCCAATTGGAGAATTTGGCAGGGAATCAAGACTGGTTTGGCCCTGGAAGCAGGGTAATGATAACAACTAGAGATATGCATCTACTAAAGACACATGAAGTGTGTGACACTTATGAGGTTGAATGTTTAGTGATGGTTTCAGTGGCTAAGAGAAGGGGGGGTTGA 1827 0.416 VLPELPSSLRELRARGCDSLVASNVNDVVSKACYGFAESSSQDREDVLQMLIHGKEIPAWFEHQEQDNGVSVSFPLNCPAPESIALSLCFLLQAIFFQFETSFLSNYVKVQLSDKRIHIGPAFNQVHLELLSEDLSVQDIASNYRGSWILTFSLLTCALFKLKEWILVLLTLLRSSEVLFDLFHHDVRLWKAYSTMLQPADFIFAWYTCFLADKVICPSGFLHLDLLESSDGLYLKHKWPMHSFIILDCGRVSSSPFLPPRSWTYHVFLSFRGQDTRKGFTDHLYASLQRKGITTFRDDMNLERGEVISHELLRAIEESMFAVVVLSPNYASSPWCLDELQKIVECKNNLGLQIVPVFYGVDPCDVRHQKGTFEDAFRKQEERFGGDSEKVKRWRDALIQVASYSGWDSKNQHEATLVESIAQHVHTRLIPKLPSCIESLFGMASRVEDVTTLMCIGLSDVRFTGIWGMGGVGKTTIARAIYEAIEDQFQISCFLANIRETCETNGILQLQKILGEHIHVSRCTFSNLYDGMRIIRNSLCNKKVLIVLDDVNDVSQLENLAGNQDWFGPGSRVMITTRDMHLLKTHEVCDTYEVECLVMVSVAKRRGG* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2320 608 SMART till_3 264 404 IPR000157 GO:0007165
Amo04g2320 608 ProSiteProfiles TIR domain profile. 263 429 IPR000157 GO:0007165
Amo04g2320 608 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 262 592 IPR044974 GO:0006952
Amo04g2320 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 597 IPR027417 -
Amo04g2320 608 Pfam TIR domain 265 433 IPR000157 GO:0007165
Amo04g2320 608 Pfam NB-ARC domain 460 597 IPR002182 GO:0043531
Amo04g2320 608 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 262 592 - -
Amo04g2320 608 Gene3D - 260 428 IPR035897 -
Amo04g2320 608 PRINTS Disease resistance protein signature 538 552 - -
Amo04g2320 608 PRINTS Disease resistance protein signature 463 478 - -
Amo04g2320 608 Gene3D - 429 591 IPR027417 -
Amo04g2320 608 SUPERFAMILY Toll/Interleukin receptor TIR domain 259 407 IPR035897 -
Amo04g2320 608 Pfam C-JID domain 53 111 IPR045344 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2320 Amo-Chr4 94908152 94915405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2320 252 597 WRKY Transcription Factor Family AT4G12020 27.324 9.02e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2320 - - ahf:112797505 733.406