Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2297 ATGGTAAGAGGAAAGACTCAGATGAGGCGCATAGAGAATGCAACAAGCAGGCAAGTAACATTCTCAAAGAGGCGTAACGGTTTGCTTAAGAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTTCTAGCTCCAGCATGCAAGAGACACTTGAACGCTATCGCAGACATACACGGAATGCTCAAACAACACCTAGATCAGATGAACAAAATACGCAGCATTTGAAGCAAGAAACGGCAAGTTTGATGAAGAAGATTGAGATTCTTGAAGCTTCAAAACGAAAATTGGTGGGAGAAGGTTTGGGATCATGTACCTTAGAAGAGTTACAGCAAATAGAACAACAATTGGAAAAGAGTGTAACCAGTGTTAGAGCTAGAAAGACTCAGGTTTACAAGGAACAAATTGAGCAACTAAAGGAAAAGGAAAAAGCTCTAATTGCTGAAAATATCAAGCTTTCAGAACAGTATGGCATCCAAGCACCACAGGCAATTCTAAAGGATCAAAAAGAAAATGAACAACCCTACCCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACCGAATTATTCATTGGACTACATAGGTCTAGTTGA 639 0.4022 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQETLERYRRHTRNAQTTPRSDEQNTQHLKQETASLMKKIEILEASKRKLVGEGLGSCTLEELQQIEQQLEKSVTSVRARKTQVYKEQIEQLKEKEKALIAENIKLSEQYGIQAPQAILKDQKENEQPYPESSSPSSDVETELFIGLHRSS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2297 212 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Amo04g2297 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Amo04g2297 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Amo04g2297 212 PANTHER MADS-BOX PROTEIN SOC1 1 209 - -
Amo04g2297 212 PANTHER MADS BOX PROTEIN 1 209 - -
Amo04g2297 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Amo04g2297 212 Coils Coil 143 170 - -
Amo04g2297 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Amo04g2297 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Amo04g2297 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Amo04g2297 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo04g2297 212 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Amo04g2297 212 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Amo04g2297 212 MobiDBLite consensus disorder prediction 177 203 - -
Amo04g2297 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Amo04g2297 212 Coils Coil 121 141 - -
Amo04g2297 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2297 Amo-Chr4 94588733 94596776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2297 1 158 MADS-box Gene Family AT2G45660 77.215 1.38e-87 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Amo04g2297 K-box 1.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2297 - - gmx:100037477 301.597