Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2293 ATGACATGGAAGAAAACAAGCACCTTTCCTGACCACAATGTCGAAGATTTCATAAAAAGTTATCGTTCCATGACTCTAAAGCGCTATAGTTATGGCGAACTAAAAGGAATAACAAATTCATTTAATGAGAAATTAAGACAAGAGAGAGAGGAATATGGTATTGTGTATAAAGCAAGATTGGTTGATGATCAATTTTGTTATGAAATACTCAGTTACAAATTTATGTTTAATGGCTCTTTGGATAAATCCATTTATAAAAAAATATCTTCTGCTGATGTGTGTGATTTGGATTATTGGAGTACATTGTATAGAATCACAATTAGTATTGTTCGAGGATTAGAATATTTACATCGAGAATATAATACAAAAATCTTACATCTTGATATCAAGCCTCAAAATATCTTTTTAGATAAAAAATTTGTTCCAAAAATTATTGACTTTGGACTGGTCAAAATATGTAAAAAACAAATGAAAGTGTCGTATATATCTATGTTGGGAGCAAAAGAAATTCCAAGGTTTATTGCACCAGAAGTATTTAGTAGAAGATATGGTGGAATTTTTCACAAATCAGATGTATACAATTGTGATATGTTAATTTTAGAAGTAGTTAGTAGAAGAAAAATCTATGATAGTATAAAACATTGCATACTAGTGAAATGTAGTTTTCAGATTGGATCTATAGGAACATAG 690 0.2899 MTWKKTSTFPDHNVEDFIKSYRSMTLKRYSYGELKGITNSFNEKLRQEREEYGIVYKARLVDDQFCYEILSYKFMFNGSLDKSIYKKISSADVCDLDYWSTLYRITISIVRGLEYLHREYNTKILHLDIKPQNIFLDKKFVPKIIDFGLVKICKKQMKVSYISMLGAKEIPRFIAPEVFSRRYGGIFHKSDVYNCDMLILEVVSRRKIYDSIKHCILVKCSFQIGSIGT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2293 229 SMART serkin_6 42 217 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2293 229 PANTHER RUST RESISTANCE KINASE LR10-RELATED 65 211 IPR045874 GO:0004672
Amo04g2293 229 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 63 IPR045874 GO:0004672
Amo04g2293 229 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2293 229 SUPERFAMILY Protein kinase-like (PK-like) 22 214 IPR011009 -
Amo04g2293 229 PANTHER TYROSINE KINASE FAMILY PROTEIN 65 211 - -
Amo04g2293 229 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 63 - -
Amo04g2293 229 Gene3D Transferase(Phosphotransferase) domain 1 38 225 - -
Amo04g2293 229 Pfam Protein kinase domain 74 212 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2293 229 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2293 Amo-Chr4 94542801 94543600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2293 4 207 Receptor kinase-like Gene Family AT4G18250 38.866 9.43e-44 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo04g2293 Pkinase 2.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2293 - - aip:107637469 217.238