Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2235 ATGAGCTTCCTTCAGGGGATCATCGATTCCTTTAACTCCGTCTTCTCTTCTGATCCTTCTTCTTCTTCTTCCTCTTCTCAATCTCACCTTAATTCGACGTCAATGGAAGCTGCTTCTTCTCCTTCTTCGGTTTCGAACGAGCGCGTGGCTTTCAAGCTCAAAGGTTACTACGATTTGGCGACGCAGGAGATCGCAAAGGCCGTTCGGGCCGAAGAGTGGGGTTTGGTCGACGACGCTATTCTTCACTACAAGAACGCTCAGAGGATCCTCCTTGAAGCCCATTCTACCCCTGTCCCTTCCTTCATCACTTCCAGTGAACAAGCAAAGGTGCAATCTTATCGTCAGAAGATATCGAAATGGCAGGGCCAAGTCTCTGAGAGATTACAGGCTCTAAGTAGACGAGCAGGGAGCTCATCTGCCAATCAGGTATGCCGTGATCTAGCTAAACTAGAAAGCACCTCAAACATTGCACAAACTGCTGCAGTTCCACTTAAGCCATCAAATGGTAGAAAAAATGTGGTACACAGGTATTCTCAACCAAGAGGGCAGGTGAATAAAGTTGGAAGCTCAAATTCTAGTCAAGCTGGTGTAAATTATGATACAAAATTGGTTGAAATGATTAACACTGCAATAGTAGACAGAAGTCCTTCTGTTAGATGGGATGATGTCGCTGGGCTTGAGAAGGCAAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGGAGAGACTTATTCACTGGTCTTCGAAGGCCAGCCAGAGGTTTGCTACTCTTCGGTCCACCTGGTAATGGAAAGACCATGCTTGCCAAAGCTGTAGCTTCAGAATCAGATGCAACATTTTTCAATGTGTCTTCCGCATCATTGACATCTAAATGGATTGATAGTATAATGTCAACAAGAACGGAAAATGAGAATGATGCGAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTTGATGGGGTGACCTCCAATAGTAATGATATTGTGATTGTAATTGGTGCAACCAACAAGCCACAGGAATTGGATGATGCAGTTCTTAGGAGGCTGGTAAAGAGAATCTATGTGCCTTTACCTGATGAAAATGTTCGGAGACTTCTGCTAAAACACAAACTCAAGGGTCAAGCATTCTCATTACCGAACAGAGATCTGGAAAAACTTGTCAAAGAGACAGAAGGTTATTCTGGAAGTGATCTTCAAGCATTGTGTGAAGAGGCTGCAATGATGCCAATTAGAGAGCTGGGATCTAACATTCTTACTGTAAGAGGATTAACTTACAATGATTTCAAGAAGGCAATGACGGTCATCAGACCAAGCTTAAAGAAAAGCAAGTGGGAAGAGCTGGAGCGCTGGAATGAGGAGTTTGGCTCTAATTGA 1383 0.436 MSFLQGIIDSFNSVFSSDPSSSSSSSQSHLNSTSMEAASSPSSVSNERVAFKLKGYYDLATQEIAKAVRAEEWGLVDDAILHYKNAQRILLEAHSTPVPSFITSSEQAKVQSYRQKISKWQGQVSERLQALSRRAGSSSANQVCRDLAKLESTSNIAQTAAVPLKPSNGRKNVVHRYSQPRGQVNKVGSSNSSQAGVNYDTKLVEMINTAIVDRSPSVRWDDVAGLEKAKQALMEMVILPTKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESDATFFNVSSASLTSKWIDSIMSTRTENENDASRRLKSEFLIQFDGVTSNSNDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPNRDLEKLVKETEGYSGSDLQALCEEAAMMPIRELGSNILTVRGLTYNDFKKAMTVIRPSLKKSKWEELERWNEEFGSN* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2235 460 SMART AAA_5 253 362 IPR003593 -
Amo04g2235 460 Pfam AAA+ lid domain 385 416 IPR041569 -
Amo04g2235 460 PANTHER BNAC04G50250D PROTEIN 295 460 - -
Amo04g2235 460 CDD MIT_spastin 53 131 - -
Amo04g2235 460 PANTHER BNAC04G50250D PROTEIN 4 295 - -
Amo04g2235 460 CDD AAA 242 360 - -
Amo04g2235 460 PANTHER AAA DOMAIN-CONTAINING 4 295 - -
Amo04g2235 460 MobiDBLite consensus disorder prediction 15 41 - -
Amo04g2235 460 Gene3D - 46 135 - -
Amo04g2235 460 Gene3D - 216 295 IPR027417 -
Amo04g2235 460 PANTHER AAA DOMAIN-CONTAINING 295 460 - -
Amo04g2235 460 Gene3D - 296 454 IPR027417 -
Amo04g2235 460 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 216 457 IPR027417 -
Amo04g2235 460 SMART smart 53 130 IPR007330 -
Amo04g2235 460 Gene3D - 361 438 - -
Amo04g2235 460 ProSitePatterns AAA-protein family signature. 332 351 IPR003960 GO:0005524|GO:0016887
Amo04g2235 460 Pfam ATPase family associated with various cellular activities (AAA) 295 360 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2235 Amo-Chr4 93389143 93393664 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2235 198 441 Calmodulin-binding Proteins AT3G56690 33.574 1.16e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2235 K13254 - gmx:100780946 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3190 14 132211542 132216096 Amo04g2235 04 93389143 93393664 hybridization