Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2228 ATGGCGTCTGCTTTAGGTGAAGGTGAAGCCTCTTCTTCTACTGCAACCAGAGACTCTTGTAAGCATCAGGTGTTCTTGAGTTTTAGGGGAGAAGACACCCGGAAAGGCTTCACTGATCATCTATCTGCCTCACTAGAAAGGCGAGGAATCACAGCTTACAGAGACGACAAGAACCTTGAGAAAGGTGATGCTATTCAAGATGAACTTTTGAAAGCAATAGAAGAATCTATGTTTGCTGTCGTTGTTCTCTCGCCAAACTATGCTTCCTCCAGTTGGTGCTTGGACGAGCTACACAAGATCCTTGAGTGCAGCAAGAATCATGGGCTATCTGTTGTGCCAGTCTTCTACAATGTGGAGCCTTCGGATGTTAGGCATCAAAAAGGAAACTTCAAGAAAGCTCTTAGAAAGCATCAGAATAGATTTGGTCAAGACAGTGACAGGATTAGAAGATGGACAGATGCTTTGACACAAATTGCTAGCTTTTCTGGTTGGGACTCCAAGAACCAGCAGGAGGCAAGATTAGTGAAGAACATAGTTGACCACATACAAAAGAAGCTACTTCCAAAATTTCCATCTTGCCCAGAAAATCTTGTTGGGATTCTTCCAAAGATGGAGATAGCAGTCTATGAAGCCATCCAATCCAAGTTTCAAGTTTGTTGCTTTATGAGGGATGTTAGGGAGGTTTCCAAGGCAAAAGGTTTTGTTCACTTACAAAGGCTTCTTCTCTCAACACTAAATGTTAGTGATGAATTTTATGACATTGAAGATGGAAAGAAGATGATACGAAACTGGTTATGCAAGAAAAAGGTTCTTCTTGTTCTTGATGATGTAAGTGAGGAAATCCAGTTGGAAAATTTGGCCGGGAAGCAAGATTGGTTTGGTCCTGGAAGCACAGTAATAATCACAACAAGGTATATGCATTTGCTTGAGATACATAGAGTGAATGGAACATATAAGGTTGAAGGGTTGGTGGAAGAAGAAGCCCTCCGCCTCTTTTGTTTGAAAGCCTTTAAAAGAGATCAACCAGAAGAAGGCTATTTGGATTTGTCCAAAGACATTGTCAAATATACTGGTGGCCTTCCATTGGCACTTAAGGTATTAGGTTCCTATTTGTGTGGCAGAGATCTTCATTTTTGGCATAGAACTGCTAGAGAATTGGGGAGCGTTCTACCCTCGGAAATCCTCAATACACTGAAAATAAGCTTTGACCATTTAGAGCCAACAGAGAAATATATCTTTCTGGATATTGCTTGTTTCTTCAAAGGAATGAACAGAGATGAAGTAGTAAATATATTACAGATGTGTGATTATTATGATGGAATTGAAAATGGAATTGCTACTTTGATTGAAAAATCTTTGATAACTCTAAGTAAGGATGAGATGTTGGAAATGCATGATCGGCTTCAAGATATGGGAAAAAATATTGTATTTCAAGAATTTCCAACTAATCCCGGGAAACGAAGCAGGTTGTGGTCTAAAAAGGACATTGATCAAGTTTTGACAAATGATATGGGAACTGAAGCAATTCAAGGAATTGTGCTACACTCAAGTTATGAAGCTCAGTGGAGTATTGAAGCCTTTTCAAAGACAAGTCAACTGACATTTCTCAGTTTACATGGCATGAAACTTCCACTTGGTCTCAACTACCTTCCTAGATCATTAAAAGTCCTTCATTGGAATTACTGTCCCTTGAAGACTTTACCCCTGGCGGATCAAAAGTATGAACTGGTTGAAATTAAACTGCGGAATAGCAAGATTGAACAAGTTTGGCACGGGAAAAAGTTTCTTGAAAAGTTGAAGTACCTGGATTTGAGTGTGTCTGAGAACCTAACTGGAACCCCTGATATTTCTGGTGCACCAATGCTTCAAAAGCTTAATCTGCAATTCTGCTCAGGGCTGAGTGAGGTTCACCCATCCCTTACACACCATGAGAACCTTGTTCAATTGGATTTCAGCAATTGCACAAGTCTCAAAACTATTCCAGGCAAACTGAAGATGAGTTCACTGGAGGAATTAGACCTGAGCAATTGCAGCAGTTTTGTAAACTTGCCAAAATTCGCGGAATGCATGAAACTATCATTGCTTTCTTTGAAACGAACCTCCATAAAAAACCTGCTACGTTCTGTCTCATCAAGTCTACCTTTGCTATGCAGTCTAGACTTAAGTTGCTGCAATCTAACTGAACTGGCATTCCCTTGCAACATTTTCCACTTGCCATTGTTGACTGATTTGAATCTGTCTCGTAACAAATTTGTCCATGTACCAATAAGCCTTCATAAACTTCCCAAGCTCAAACGTCTTTGTCTAAATAATTGCCCAAATCTTAAGTCTCTCCCGGTGCTCCCCTCAAGTATTGAGATATTGGAAGCATGCAATTCTTTCATTGCTTATCATGAAACAGGATTTGATCGTTGTGAATCCATATTCAATTTCTTTCGATCATCGAGCAGTGATCGTTCTCAGGTCTTTATCATGGAGTTCACATCATGGATATATACGGAAGAAAAAGTTTCACCGTGGCAATCTTTTTTAAGTTTCAATCTAGAAGATGGTGAACATCTTTCTCTCCCACCACAAGGTGATTTCGCTCCAAATGATAGGTTGGGAATTATACTATGCTTTCAGACAGCTACTTATTTGAACAAGACGGATTTGTGTGTCTGCAATGGTAGAAGATGGATCACCAAGGCAATCGCTGCTGAATCATGCCCTGATTATACGTTTAAGCTCTCTGTCAATTACCTTAATCACAACATGCAGAAAGCATGGAGCTATGGCTCCAACCAATGCTGGGGCCGCTGGGTGCATCAACAAGATTTTATTGACTAA 2829 0.4008 MASALGEGEASSSTATRDSCKHQVFLSFRGEDTRKGFTDHLSASLERRGITAYRDDKNLEKGDAIQDELLKAIEESMFAVVVLSPNYASSSWCLDELHKILECSKNHGLSVVPVFYNVEPSDVRHQKGNFKKALRKHQNRFGQDSDRIRRWTDALTQIASFSGWDSKNQQEARLVKNIVDHIQKKLLPKFPSCPENLVGILPKMEIAVYEAIQSKFQVCCFMRDVREVSKAKGFVHLQRLLLSTLNVSDEFYDIEDGKKMIRNWLCKKKVLLVLDDVSEEIQLENLAGKQDWFGPGSTVIITTRYMHLLEIHRVNGTYKVEGLVEEEALRLFCLKAFKRDQPEEGYLDLSKDIVKYTGGLPLALKVLGSYLCGRDLHFWHRTARELGSVLPSEILNTLKISFDHLEPTEKYIFLDIACFFKGMNRDEVVNILQMCDYYDGIENGIATLIEKSLITLSKDEMLEMHDRLQDMGKNIVFQEFPTNPGKRSRLWSKKDIDQVLTNDMGTEAIQGIVLHSSYEAQWSIEAFSKTSQLTFLSLHGMKLPLGLNYLPRSLKVLHWNYCPLKTLPLADQKYELVEIKLRNSKIEQVWHGKKFLEKLKYLDLSVSENLTGTPDISGAPMLQKLNLQFCSGLSEVHPSLTHHENLVQLDFSNCTSLKTIPGKLKMSSLEELDLSNCSSFVNLPKFAECMKLSLLSLKRTSIKNLLRSVSSSLPLLCSLDLSCCNLTELAFPCNIFHLPLLTDLNLSRNKFVHVPISLHKLPKLKRLCLNNCPNLKSLPVLPSSIEILEACNSFIAYHETGFDRCESIFNFFRSSSSDRSQVFIMEFTSWIYTEEKVSPWQSFLSFNLEDGEHLSLPPQGDFAPNDRLGIILCFQTATYLNKTDLCVCNGRRWITKAIAAESCPDYTFKLSVNYLNHNMQKAWSYGSNQCWGRWVHQQDFID* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2228 942 SMART till_3 21 161 IPR000157 GO:0007165
Amo04g2228 942 Gene3D - 204 315 IPR027417 -
Amo04g2228 942 Gene3D Ribonuclease Inhibitor 442 796 IPR032675 -
Amo04g2228 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 416 IPR027417 -
Amo04g2228 942 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 200 - -
Amo04g2228 942 Pfam NB-ARC domain 212 387 IPR002182 GO:0043531
Amo04g2228 942 ProSiteProfiles TIR domain profile. 20 186 IPR000157 GO:0007165
Amo04g2228 942 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 675 810 - -
Amo04g2228 942 PRINTS Disease resistance protein signature 264 278 - -
Amo04g2228 942 PRINTS Disease resistance protein signature 664 680 - -
Amo04g2228 942 PRINTS Disease resistance protein signature 357 371 - -
Amo04g2228 942 Gene3D - 16 189 IPR035897 -
Amo04g2228 942 SUPERFAMILY "Winged helix" DNA-binding domain 392 500 IPR036390 -
Amo04g2228 942 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 208 597 - -
Amo04g2228 942 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
Amo04g2228 942 SUPERFAMILY L domain-like 480 795 - -
Amo04g2228 942 Gene3D - 322 406 IPR042197 -
Amo04g2228 942 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 675 810 IPR044974 GO:0006952
Amo04g2228 942 Pfam TIR domain 21 196 IPR000157 GO:0007165
Amo04g2228 942 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 208 597 IPR044974 GO:0006952
Amo04g2228 942 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 200 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2228 Amo-Chr4 93307896 93312146 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2228 29 795 WRKY Transcription Factor Family AT4G12020 30.525 9.75e-83 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2228 - - adu:107485461 1746.1