Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2196 ATGCATGGATATGCAATATTTAAACAGAACGCATTCCACATAATGCCAGCTGGTAGCATAATGTTTGTCTTCTTATTTCAGGACACAATGTATGATACCAGAGTGGAGGAAGATGCTGAGTCATCCGACTGGGAAGGTCGGGGGGCTTTAATGTTGCCCGTTTTTTTGGGTTTGGATGGGTTGCGAGCTGAAGATGTTCTTGAAATGGAGTTCTCTTCACCTCAGGAGGCTAGCGGCTTCTATAACAATTACAGCCGACTAAAGGGCTTTGCATCAAGGCGAGGCAAGACGGTTAGAAACACTGCCGGAGAGATAGTGCGGTACACGTTTATTTGTAATAGGCAAGGATTTCGAGAGAAGAAATGGTTGGAAAAGGTTGATCGCAAAAGGGAGCATAAGACTGTAACCCGATGTGGATGTTTGGCGGAGATGAGGATAAAGAGGAAAGAGGGTAGTGGGAGGTGGTATGTGTCGTGTTTTGTCGAGGAGCATAACCATGAACTTGCGTATGGGAAGCTTGTTGATTATCTGCGGTCACACAGGAAGATATTTGAGGTAGAAGTTGCTCAGCTAACAAGCATGAGAGAGATTGGGATTAGCATACCTAAGATTTATGAGTCCTTCGCAGCACAACTAGGGGGTTTTAACCTGGTAACATTCACAAAGCAAGATATGTGTGTGGATTTTCTGCGTGACACCGAGGATGAGCTAGACTTTCGTTCATGGTACGGAACACCTGTGCTACAAACGGAGTTCGTTGAGCTGGAAAAGTCTGGATGGACTATGTTCACCCGCGAAATGTTTCTCAGATACCGGGATAGCCTGAAACGGTGTGTTCGTGTTAGAATATGTGAATTTGATGACAGTGACAACCCTCATGCATATACTCTTCAGAAGTATCGGTGGAAGGTTTATAGGGACCATATCTCGAACAGATTTACTTGCAGCTGCATGCGTATGGAGTCGTTTGGCATTCCTTGTGTGCATATCCTTTCCGTTTGTGTAAGGCTAGACTTGGTGGAAATCCCTGAAAGCCTGGTGCTGCGTAGGTGGTCTAAGGCAGCCAAATTGGAGATACATAACCAATGTGGTGAGCAACACACTGCTGAACCAAGTGTGACCTATAGGACACGATTGGGTGCTTTCTCCCAGCTGTGTAAGCGTTTAGGGCGCGTTGCTTGCATGAGCGATGAAGACTTCAAGCTTTACTCAAACAAGCTTATGAGCGATGCTCTGTTCCTTGAAATAAAGTACAGCTTAAGACCATTAACGGATAATATGACAATAGCAAATGATTGCGCGGTGAAGGACCCCATTCGTGTCAGGACTAAAGGCACGGCTCGGATGAGTCAAGCAAGCGGTTCTGCGCCGAAAACGAAAAGAAAGTGCAGCACATGCGGGAAGCTCGGGCACCGGAGGACTAGATGCCCCAACGGAGGCGCGCAACCTTCAACGAGGAACAAAGAATCACTTGCTGGGAGAAATAAACGCAAGCGAACGAAGGTTACCACCTAA 1515 0.4653 MHGYAIFKQNAFHIMPAGSIMFVFLFQDTMYDTRVEEDAESSDWEGRGALMLPVFLGLDGLRAEDVLEMEFSSPQEASGFYNNYSRLKGFASRRGKTVRNTAGEIVRYTFICNRQGFREKKWLEKVDRKREHKTVTRCGCLAEMRIKRKEGSGRWYVSCFVEEHNHELAYGKLVDYLRSHRKIFEVEVAQLTSMREIGISIPKIYESFAAQLGGFNLVTFTKQDMCVDFLRDTEDELDFRSWYGTPVLQTEFVELEKSGWTMFTREMFLRYRDSLKRCVRVRICEFDDSDNPHAYTLQKYRWKVYRDHISNRFTCSCMRMESFGIPCVHILSVCVRLDLVEIPESLVLRRWSKAAKLEIHNQCGEQHTAEPSVTYRTRLGAFSQLCKRLGRVACMSDEDFKLYSNKLMSDALFLEIKYSLRPLTDNMTIANDCAVKDPIRVRTKGTARMSQASGSAPKTKRKCSTCGKLGHRRTRCPNGGAQPSTRNKESLAGRNKRKRTKVTT* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2196 504 ProSiteProfiles Zinc finger SWIM-type profile. 300 338 IPR007527 GO:0008270
Amo04g2196 504 SMART 26again6 313 340 IPR006564 GO:0008270
Amo04g2196 504 ProSiteProfiles Zinc finger CCHC-type profile. 461 478 IPR001878 GO:0003676|GO:0008270
Amo04g2196 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 232 359 - -
Amo04g2196 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 59 183 - -
Amo04g2196 504 MobiDBLite consensus disorder prediction 444 504 - -
Amo04g2196 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 232 359 IPR031052 GO:0006355
Amo04g2196 504 Pfam FAR1 DNA-binding domain 80 169 IPR004330 -
Amo04g2196 504 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 59 183 IPR031052 GO:0006355
Amo04g2196 504 MobiDBLite consensus disorder prediction 446 460 - -
Amo04g2196 504 SUPERFAMILY Retrovirus zinc finger-like domains 443 480 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2196 Amo-Chr4 92811434 92813725 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g2196 FAR1 2.4e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2196 - - adu:107487706 548.125