Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2182 ATGGAGGCAAGAGAAGCTATTAGCTCTGGGGTTACGGTGATAGGGGCGGAAGCTCCCTCTGCATACCATGTGGCACCAAGGAGTGAAGCTCCGAGCCAAGTTCCTGGCCCGGATGCAGCTGCTAATGCTGCTCTTGGTGTTTCGCCCGTGAGTGTGGGATTGGATGGAACAACAGTTAAGAAAAAACGTGGTAGGCCAAGGAAGTATGGACCGGATGGATCGGTTAATATGGCATTGTCACCATTGCCAATTTCTTCTTCGGCTCCGTCTTCTAACGAATTTTCGAGCTTCCATTCAAGTGGCAAGCGAGGGAAATCGCGGGGTATGGAGTACAAGCCACTCAAAGAAATCGGAAAGCGGGTGGGGGTGGAGCGGATGATTCTAGGAGATTCCATGGGTACAAGCTTTATGCCCCATATCATTACTGTCAATGCTGGCGAGGACATCACAATGAAGGTTATATCGTTTTCTCAACAAGGACCACGAGCTATATGCATACTATCTGCTACTGGTGTAATTTCAAATGTTACGCTTCGCCAGCCTGATTCTTCAGGAGGAACTTTGACCTATGAGGGTCGTTTCGAGATACTTTCCTTGACTGGATCATTTATGCCTACTGACAACGAAGGAACGAGAAGCCGGTCAGGTGGGATGAGTGTCACCTTGTCCAGCCCTGATGGCCGTGTCTTAGGCGGTGGCGTTGCTGGTCTTCTTGTAGCTGCCAGTCCTGTGCAGGTGGTTGTTGGAAGTTTTCTGCCAAGCAACCAGCAAGATCCGAAACCAAAGAAGCAGAAGCATGATTACGCACCACCACCAGCAGTTAACCCCCCCGCCGTTGCAGTGTCCTCTGCGCCACCACCCTCAACTAATGGCGATAAAGAGGATGTCATGGGTGGGCACGTGATGCAACACAATCCCGGAGCCTTCAACTCTAGCCTCACTCCTCCCTCGGCCTTCCGAAGGGACAGCTGGGTTAACATGCATTCCATGCCGGACTCGATTAAATCCACCACGGATATTAACATATCTTTGCCTGATGATTGA 1044 0.5077 MEAREAISSGVTVIGAEAPSAYHVAPRSEAPSQVPGPDAAANAALGVSPVSVGLDGTTVKKKRGRPRKYGPDGSVNMALSPLPISSSAPSSNEFSSFHSSGKRGKSRGMEYKPLKEIGKRVGVERMILGDSMGTSFMPHIITVNAGEDITMKVISFSQQGPRAICILSATGVISNVTLRQPDSSGGTLTYEGRFEILSLTGSFMPTDNEGTRSRSGGMSVTLSSPDGRVLGGGVAGLLVAASPVQVVVGSFLPSNQQDPKPKKQKHDYAPPPAVNPPAVAVSSAPPPSTNGDKEDVMGGHVMQHNPGAFNSSLTPPSAFRRDSWVNMHSMPDSIKSTTDINISLPDD* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2182 347 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 346 - -
Amo04g2182 347 MobiDBLite consensus disorder prediction 79 102 - -
Amo04g2182 347 Gene3D - 138 267 - -
Amo04g2182 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 346 IPR039605 GO:0003680
Amo04g2182 347 MobiDBLite consensus disorder prediction 252 298 - -
Amo04g2182 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 251 IPR005175 -
Amo04g2182 347 CDD DUF296 138 251 IPR005175 -
Amo04g2182 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 254 - -
Amo04g2182 347 MobiDBLite consensus disorder prediction 24 108 - -
Amo04g2182 347 ProSiteProfiles PPC domain profile profile. 133 272 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2182 Amo-Chr4 92330829 92334622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2182 10 268 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 56.897 1.31e-93 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2182 - - gmx:100777213 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2182 04 92330829 92334622 Amo12g2814 12 114322264 114326769 PCT
Amo12g2814 12 114322264 114326769 Amo04g2182 04 92330829 92334622 PCT