Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2174 ATGAACATCGATGACAATAAGAATTTAAAGGAGTCTATCGAATGTAATGAGCTGTGTTTTGGGTATGATAGTAGTTCTGACAAGGAGGAGGAAGATCTTATCACCAATGAGGGTAAATTTAGTGAATCCATGGAGATGTCGAATTATAGCTATAAAATTCAAGAAGTTGAGAAGAAGTTAAACGAATTAAGCTATGATGACATGTGGGGTATTGAGTTTGACAACGTTGATCAATGTTGTGATTTTTATAGAAATTATGCTGAAGTGCACGATTTTGTTGCGAGACTTGACGAAAAAGGACAAGATTTCAGTGGAAACCTTAATATGCGACAGATGGTTTGTAACAGAGAGGGTACACATAGAAAAAAGTACTTGGAGATGGAGAACAGAAAAAAGGATCACAAGCCAATCACACGTGTAATGTGTCAAGCAAAGATTAGATTTCACTATGATTTGATTTTACAAAAGTGGCGGGTCACCAAATTTGAAGAGACTCACAACCATGACCTCATCCCACCTAAGTATATCCAGTTTGTTCCAGCATATCGAACAATGACTGACGCTGATAAAGCACAGGCTGATAGTTTGCACTTTTATGGATATCGGACAAATGAACTCTTATCTGATTTTAAATCATTGTTTACAACTCCTGTGTTGACCACGTGTCTTCAAGACATTGAGAAGCAAGCTGCCGATATTTTTACCAGAAGCATGTTTAAAGAGGTTCGGTGTGAGATAGAAGAAGCTGGCAAATTAAATGTTGTTACACATTCAGTAAGCAACAATGAAGTTAAGTCGGCATCAAAGAACCGAGATGACTTCATGGAGATTAGAGATGACATTTTTGGACTAATCCAAAAACTTAAAAAGAGACGCGATCCTGACTCCAATGTTCTTTCTAATGCGTGTATGGTCGGTGACCCAACTGTTGTGAAGACAAAGGGAGTCCTTCGTCAAAATAGATGGGCAATAAAATCTCGTAAGTGTTCTCATTGTATACGTCGTGGTCATACGATTCGAAGGTGTCCAGAATTATACAGTAGAGACGTCCTACATACTGGTCATCACCAATCGAGTGATGAACTCAATGATGAAAAGGATACAAGAGTTGATGACACAAGTTTAAAGTCCAAAAAGTATAAGCAAATAAAGGTGTTCTAA 1161 0.3773 MNIDDNKNLKESIECNELCFGYDSSSDKEEEDLITNEGKFSESMEMSNYSYKIQEVEKKLNELSYDDMWGIEFDNVDQCCDFYRNYAEVHDFVARLDEKGQDFSGNLNMRQMVCNREGTHRKKYLEMENRKKDHKPITRVMCQAKIRFHYDLILQKWRVTKFEETHNHDLIPPKYIQFVPAYRTMTDADKAQADSLHFYGYRTNELLSDFKSLFTTPVLTTCLQDIEKQAADIFTRSMFKEVRCEIEEAGKLNVVTHSVSNNEVKSASKNRDDFMEIRDDIFGLIQKLKKRRDPDSNVLSNACMVGDPTVVKTKGVLRQNRWAIKSRKCSHCIRRGHTIRRCPELYSRDVLHTGHHQSSDELNDEKDTRVDDTSLKSKKYKQIKVF* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2174 386 SUPERFAMILY Retrovirus zinc finger-like domains 318 346 IPR036875 GO:0003676|GO:0008270
Amo04g2174 386 Pfam FAR1 DNA-binding domain 81 171 IPR004330 -
Amo04g2174 386 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 27 240 - -
Amo04g2174 386 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 27 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2174 Amo-Chr4 92256052 92258875 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo04g2174 FAR1 2e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2174 - - adu:107485383 426.787