Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2161 ATGGGCAATTGCGGCACCAGAGAAGAATCCGCAGTAGTTTCCAATGCTCAAGTTCAGCAGCTCCAGGCGTCGTCCTTGAGCTCCAGGAACGCCGGCYCCGGCGCCGGTGACAGGAAGCACAGCCGCTCGGTGTCGGATCTGAGCGAGTCTTGCTCCACGCCGCGCCACTACAACATCGAAGACGTGAGGAACAACACGCTGCTCTACACGCACGTGATCGCGTTCACGCTCTACGAGCTTGAGACYATCACCAAGAGTTTTCGCTCCGATTATATTCTCGGAGAGGGAGGGTTTGGGACTGTGTATAAGGGGTACATTGATGAGAATGTGAGGGTTGGGCTCAAGTCGCTGCCCGTAGCGGTTAAGGTTTTGAACAAGGAAGGGCTTCAGGGACACCGAGAATGGCTTACGGAAGTGAATTTTCTAGGGCAGCTTAGGCATCCTAATCTGGTGAAGTTGATAGGGTACTGCTGTGAGGATGACCACAGGCTGCTTGTGTACGAGTTCATGTTTCGAGGAAGTCTGGAAAATCACCTATTCCGAAAGGCAACTATCCCTTTACCATGGGCTACAAGAATGATGATTGCTCTAGGAGCTGCCAAAGGGCTTGCCTTTCTGCACAATGCTGAAAGGCCAGTAATCTACCGTGACTTTAAAACGTCTAATATATTATTGGACTCTGACTATACGGCCAAGCTTTCTGATTTTGGTCTAGCAAAAGCAGGACCACAAGGGGATGAAACCCATGTATCTACCCGAGTCATGGGTACATATGGTTATGCTGCCCCCGAATATGTAATGACTGGCCACTTGACAGCTAGGAGTGATGTGTATAGCTTTGGGGTTGTTCTTTTGGAGCTTTTGACGGGAAGGAAATCTGTTGACAAGACAAGACCTGGGAAGGAACAGAGCTTAGTAGATTGGGCACGGCCAAAGCTTAATGACAAGCGCAAACTCCTGCAAATAATTGATCCTAGATTGGAAAACCAATATTCAGTGAGAGCTGCACAGAAAGCATGTAGCTTGGCATACTATTGTTTGAGTCAAAATCCGAAAGCCAGACCACTAATGAGCGATGTGGTCGAGACATTGGAGCCCTTACAAAGTTCAAGTATAGGTGCCGGTGAAGTTTCATTAACCGGCTCAAATAGTGTAAGCACAGGGCACTTTCCGATGACCAAAATCTCCGACTACCGAATGCGTCCCAAGTTCTCAAACAATGTTGGTCCTGGTGCTGCTTGCCGGTCTCCTAACCCTAGCTGCTCGCCGGGTGCTGCAGCAGCATGCCGGGTAAGATAA 1299 0.4942 MGNCGTREESAVVSNAQVQQLQASSLSSRNAGXGAGDRKHSRSVSDLSESCSTPRHYNIEDVRNNTLLYTHVIAFTLYELETITKSFRSDYILGEGGFGTVYKGYIDENVRVGLKSLPVAVKVLNKEGLQGHREWLTEVNFLGQLRHPNLVKLIGYCCEDDHRLLVYEFMFRGSLENHLFRKATIPLPWATRMMIALGAAKGLAFLHNAERPVIYRDFKTSNILLDSDYTAKLSDFGLAKAGPQGDETHVSTRVMGTYGYAAPEYVMTGHLTARSDVYSFGVVLLELLTGRKSVDKTRPGKEQSLVDWARPKLNDKRKLLQIIDPRLENQYSVRAAQKACSLAYYCLSQNPKARPLMSDVVETLEPLQSSSIGAGEVSLTGSNSVSTGHFPMTKISDYRMRPKFSNNVGPGAACRSPNPSCSPGAAAACRVR* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2161 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Amo04g2161 432 PANTHER OS01G0588500 PROTEIN-RELATED 28 419 - -
Amo04g2161 432 CDD STKc_IRAK 93 367 - -
Amo04g2161 432 Gene3D Transferase(Phosphotransferase) domain 1 170 377 - -
Amo04g2161 432 ProSitePatterns Protein kinases ATP-binding region signature. 93 122 IPR017441 GO:0005524
Amo04g2161 432 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2161 432 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL8-RELATED 28 419 - -
Amo04g2161 432 Gene3D Phosphorylase Kinase; domain 1 48 169 - -
Amo04g2161 432 MobiDBLite consensus disorder prediction 27 49 - -
Amo04g2161 432 Pfam Protein tyrosine and serine/threonine kinase 92 364 IPR001245 GO:0004672|GO:0006468
Amo04g2161 432 SUPERFAMILY Protein kinase-like (PK-like) 64 365 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2161 Amo-Chr4 92088042 92092019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2161 60 374 Glycoside Hydrolase AT3G07070 52.830 1.68e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Amo04g2161 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2161 - - gmx:102662348 738.799