Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2143 ATGAACACTTCAATGTGCAATTCATGGAATGGAGTTACCTGCAATCCCAAGGGCACAAATGTAATTTCACTGAGGCTACCAGGTGTTGGTTTGAGAGGTTCTCTGCCACCAAACACAATTGGTAAGCTCAATGGCCTCACAAGTCTTAGTCTAAGGTCTAACACATTGAGTGGCAAAATCCCAAATGACATTCTTGCCCTTCATTCCCTAAGGTTTCTATATCTTCAACATAACAATTTCTCAGGTGAATTTCCAAATTTTCTTCCACCTAGGCTTGTGCTTCTTGATTTGTCACATAACTCTTTCACAGGACAAATTTCAAACTCAATCCAAAATTTGACTAATCTAACTGGTTTGTTCCTCAAGAACAATTCACTTATAGGGCCTATTCCTAATGTAACCCTTCCTAGCCTTAAGGATTTGGATTTGAGCTTTAACAACCTTAATGGTTCAATTCCTTTAGCATTTCATAGGTTTCAATCTTCATCATTTGATGGGAATTTGATGCTATGTGGACCACCTTTGACAAAACAATGTTCCTCATCAAGTCCTCTTAGTAGTCCAATGTTGTCTCCACTAATAGTATCTCAAAATTCAAGTGATGTTTCCAAGAAGAGGCCAATTCTTGGGGTGGTGGTCGCTGCCGCCTTGGGAGGTTTCGGACTACTTTTTCTACTAGTTTTGATGTTGGTGTTGTATTTTCTTAAGAAGAGAGTTGGTGAACAAAATGAGGCACCAAAAGCAAGTAAACTTGGTGAGAATCTTAGGGAGGATTTTGGGAGTGGTGTGCAAGAACCTGAGAAGAACAAGTTGGTATTTTTCGGAGGGTGTTCTTATAACTTTGATCTTGAGGATTTGTTRAGAGCTTCAGCTGAAGTTCTTGGTAAGGGAAGTTGTGGAACAACTTATAAGGCARTCTTGGAAGAAGGGACAGTAGTTGTTGTTAAGAGGCTGAAGGAAGTTGCAATTGGGAAGAGAGAATTTGAACAGCAAATGGAAACTGTGCAAAAGCTTGATCAGCATCCAAATGTTGTTCCATTTAGTGCTTACTATTATTCCAAGGATGAGAAGCTAGTGGTTTATGATTACCTACCATTTGGAAGCTTTTCCAAGTTATTGCATGGAACAAGGGAAACTGGAAGAACTCCACTAGATTGGGACACCAGATTGAAGATAATGCTTGGAGCTGCTAAGGGTGTTGCTCATATTCATTCTGCAAGTGGAAGGAAATTTGTCCATGGCAATATAAAATCATSTAATGTGCTACTCTTAGGTGATCTACAAGGCTGCATATYGGATTTCGGCTTAGCTCCTCTAGCGAGTTTCTCAGGCTCCTTTAGGAGTCCTGGATATCGAGCCCCCGAGGTTATTGAGACCCAAAAATCCACACAAAAATCTGATGTGTACAGCTTTGGGGTTCTCCTTCTTGAGATGTTGACCGGCAAAACACCGATTCAGTATTCAGGACATGATGATCCGGTTGATCTTCCGAGGTGGGTTCAATCTGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATCTTGAGCTAATGAGGTATCCAAATATTGAGGAAGAATTGGTGCAAATGCTGCAACTTTCAATGGCATGTGTTGCAATGGTTCCTGACACAAGACCCTCAATGGAGGAAGTTGTAAGGGTTATTGAAGAAATCATAGGATCCTATTCTGAGAACCAGACATCATTATCAGACAAGTTCAAGGGAACTCATGATTTCATTCCATACTACTGA 1752 0.4047 MNTSMCNSWNGVTCNPKGTNVISLRLPGVGLRGSLPPNTIGKLNGLTSLSLRSNTLSGKIPNDILALHSLRFLYLQHNNFSGEFPNFLPPRLVLLDLSHNSFTGQISNSIQNLTNLTGLFLKNNSLIGPIPNVTLPSLKDLDLSFNNLNGSIPLAFHRFQSSSFDGNLMLCGPPLTKQCSSSSPLSSPMLSPLIVSQNSSDVSKKRPILGVVVAAALGGFGLLFLLVLMLVLYFLKKRVGEQNEAPKASKLGENLREDFGSGVQEPEKNKLVFFGGCSYNFDLEDLLRASAEVLGKGSCGTTYKAXLEEGTVVVVKRLKEVAIGKREFEQQMETVQKLDQHPNVVPFSAYYYSKDEKLVVYDYLPFGSFSKLLHGTRETGRTPLDWDTRLKIMLGAAKGVAHIHSASGRKFVHGNIKSXNVLLLGDLQGCIXDFGLAPLASFSGSFRSPGYRAPEVIETQKSTQKSDVYSFGVLLLEMLTGKTPIQYSGHDDPVDLPRWVQSVVREEWTAEVFDLELMRYPNIEEELVQMLQLSMACVAMVPDTRPSMEEVVRVIEEIIGSYSENQTSLSDKFKGTHDFIPYY* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2143 583 SUPERFAMILY Protein kinase-like (PK-like) 292 559 IPR011009 -
Amo04g2143 583 PANTHER OS05G0480400 PROTEIN 2 572 - -
Amo04g2143 583 Gene3D Phosphorylase Kinase; domain 1 257 363 - -
Amo04g2143 583 Pfam Leucine rich repeat 34 80 IPR001611 GO:0005515
Amo04g2143 583 Gene3D Transferase(Phosphotransferase) domain 1 365 579 - -
Amo04g2143 583 PANTHER OS05G0588300 PROTEIN 2 572 - -
Amo04g2143 583 Pfam Leucine Rich Repeat 92 113 IPR001611 GO:0005515
Amo04g2143 583 SUPERFAMILY L domain-like 5 175 - -
Amo04g2143 583 Pfam Protein kinase domain 291 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2143 583 ProSiteProfiles Protein kinase domain profile. 288 559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2143 583 Gene3D Ribonuclease Inhibitor 90 181 IPR032675 -
Amo04g2143 583 PRINTS Leucine-rich repeat signature 135 148 - -
Amo04g2143 583 PRINTS Leucine-rich repeat signature 92 105 - -
Amo04g2143 583 Gene3D Ribonuclease Inhibitor 1 89 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2143 Amo-Chr4 91575818 91578273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2143 5 571 Receptor kinase-like Gene Family AT5G58300 60.000 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Amo04g2143 Pkinase 3.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2143 - - gmx:100810832 789.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3074 14 129671906 129674320 Amo04g2143 04 91575818 91578273 hybridization