Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2128 ATGTTTGGACGAGTCTTGCAAGGGATAGACTCGTCGAAAAGAGATGCCTTGATCATCAAGCAAATAATGCGCCAAATGATTATTTCGCTTAAGAAGATTCATGACTCGGGCATTGTTCACAGGGATATAAAGCCTGCCAACTTGGTGGTTACCAAGCAGGGACAGATCAAACTCATTGATTTTGGTTCAGCTACTGATCTGCGAATCGGAAATAATTATGTTCCCAATTTTACCCCTTTGGATCCTGACTATTGTCCCCCAGAATTGTATGTGCTGCCTGAAGAAACAACCAGTCTTCCTCCAGAGCCAGTTGCATCTTTTCGTTCACCAATATTGTGGCAGTTAAAAAGTCCTGATCTATTTGACATGTATTCTGCTGGGATTATACTCTTGCAAATGGCAATACCAACCTTAAGGTCTAAATCTGCTCTGAAGAATTTCAATTTGGAATTAAGGAACTGTGGATTCGACCTGAAGAAATGTCGGAGCTTTACTCGTAGCCGGTTTGATTTTCGAATCCTTGACGGGGATTCCGGTAGAGGTTGGGACTTAGCAACCAAGCTTATCTCAAAGAGGGATTCCCCGGCGAGTGGATGCTTATCGGCCGCGGCTACTTTGAGGCATCCTTATTTTCTTCTTGGTGGTGATCAGGCAGCTTTAGTCCTTTCAAAATTAAGCTTGAGCATAAAGTGA 693 0.4315 MFGRVLQGIDSSKRDALIIKQIMRQMIISLKKIHDSGIVHRDIKPANLVVTKQGQIKLIDFGSATDLRIGNNYVPNFTPLDPDYCPPELYVLPEETTSLPPEPVASFRSPILWQLKSPDLFDMYSAGIILLQMAIPTLRSKSALKNFNLELRNCGFDLKKCRSFTRSRFDFRILDGDSGRGWDLATKLISKRDSPASGCLSAAATLRHPYFLLGGDQAALVLSKLSLSIK* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2128 230 Gene3D Transferase(Phosphotransferase) domain 1 9 213 - -
Amo04g2128 230 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 228 - -
Amo04g2128 230 SMART serkin_6 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2128 230 Pfam Protein kinase domain 18 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2128 230 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 228 IPR044803 GO:0004674|GO:0009579
Amo04g2128 230 SUPERFAMILY Protein kinase-like (PK-like) 14 192 IPR011009 -
Amo04g2128 230 ProSiteProfiles Protein kinase domain profile. 1 211 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2128 230 ProSitePatterns Serine/Threonine protein kinases active-site signature. 38 50 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2128 Amo-Chr4 91403430 91405032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2128 25 211 AGC Kinase Gene Family AT3G10540 28.646 6.51e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Amo04g2128 Pkinase 4.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2128 - - ahf:112794393 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2128 04 91403430 91405032 Amo12g0436 12 7143462 7145787 PCT
Amo04g2128 04 91403430 91405032 Amo02g0517 02 6401338 6404113 PCT