Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2120 ATGGAACTGCATGATGCCACCACCAATAGTAGTAGCACTAGTGTGCCCTTTGAAATCTCAGGTTCTTCTTCACAACAGCATGTAGTTCATCATGATAATAGGTTGAGTAGTAATCACAATAATTATAGTAAGCCTCAGAGGGTTAGGCACAAGAGCAGCGTGCAGTTTGATGATGCTTTGTTGCATGATGATAGTGCTAGGTTGATATATATTAATGATCCTAAGAGGACTGATGATAAGTGTGAGTTGCCGGGGAATGAGATCAGGACTAGTAAATACACAATTGTTACCTTCTTGCCTAAGAATCTTTTTATTCAGTTTCATAGGGTTGCTTATTTGTATTTCCTTGCTATTGCGGCTCTCAATCAGCTTCCTCCCTTGGCCGTATTTGGGAGGACTGTGTCACTCTTCCCGCTRTTGTTTGTGCTCTGCGTCACKGCTATTAAGGATGGATATGAAGACTGGCGGCGGCACAGGTCGGATCGCAATGAGAACAACCGGGAATCATTGGTGCTTCAGCATGATGATTTCCGGCCRAAGAAGTGGAAGAATATACAAGCTGGTGAGGTTGTTAAGATCTTTGCTGATGAGACGATTCCAGCTGACATGGTCTTGCTGGGGACAAGTGATCAAAGTGGGCTTGCCTATATTCAGACAATGAATTTGGATGGAGAGTCGAATTTGAAGACTAGGTATGCTAAGCAGGAAACAACTGCTGCAGTTTCTTCGGAAGCTTGTCGTGTTTCTGGGGTTATCAGATGCGAGCAGCCTAACCGGAATATTTATGAGTTCACGGCAAACATGGAGTTCAACGGACTTAAGTTTTCGCTTAGCCAGTCTAACATTGTTCTGCGTGGTTGCCAACTGAAGAACACAGATTGGATCATTGGTGTTGTGGTTTATGCCGGACAAGACACAAAAGCAATGATGAACAGCACACCTTCTCCTTCTAAGAGAAGCAAACTTGAAAGTTACATGAACAGAGAAACCCTTTGGTTGTCAATTTTTCTTTTCATCATGTGTTTAGTTGTGGCCATTGGGATGTGTCTTTGGCTGGTGCGGCACAACAGCCAGCTTGATACCTTGCCTTACTACAGAAAACGATACTTCAACAATGGGCCAGATAATAGAAAGAGATACAAGTATTATGGGATACCAATGGAGGCATTTTTCTCCTTCCTGAGTTCCATTATAGTGTTTCAGATAATGATACCAATATCTCTTTACATCACGATGGAATTGGTTCGTTTGGGCCAGTCATACTTCATGATTGAAGATGGGGATATGTATGATGCTAACTCTGGATCAAGGTTTCAGTGTAGGTCATTAAATATAAATGAAGATTTGGGTCAAATACGCTATGTATTTTCAGACAAGACAGGAACACTAACCGAAAACAAAATGGAATTCCAGAGAGCTAGTGTATATGGGAAGAATTACGGGAACTCGTTGGTCGTGGCTGATGATACAGCTGCACCTGTTATTCCTAGACGGAGATGGAAGCTCAAATCTGAAATCAGAGTTGATTCTGAACTGCTGACAGTGTTGCAGAGCGAATCACATGGAGATGACAGAATTGCTGCACATGAATTTTTTCTTACATTGGCAGCTTGCAATACTGTGATCCCTATTCCTACTGGTGGTACATTCTCCAGTCCTGGAACAAGTGAATCAGATGAAGATATGGAAGGTATTGAGTACCAGGGAGAATCCCCTGATGAACAAGCTCTAGTCTCTGCTGCTTCTGCATATGGATATACCCTTTTTGAGCGAACATCCGGACACATTGTTATCGACGTCAATGGTGAGAAGCTCAGATTGGACGTATTGGGCCTACACGAGTTTGATAGTGTGCGCAAGAGGATGTCTGTTGTTATTCGTTTTCCCAACAACGTTGTAAAGGTGTTRGTCAAAGGTGCTGATACTACAATGTTTAGCATTTTAGCAAATGACAGTGAGAGCCACAATACCATACGAGATGTAACWCAGAGTCATCTGAATGAATATTCTTCACTAGGTCTGCGCACTCTTGTAGTTGCATCTAGAGATCTTTCAGATGCTGAACTTGAAGAGTGGCAAAGCATGTATGAAGAGGCMAGCACTTCTTTGCATGAAAGAGCTGCTAAACTACGTCAAACAGCAGCGTTTATAGAATGCAACTTAAAGCTACTTGGAGCAACGGGAATTGAGGACAAGCTRCAAGAGGGTGTACCAGAAGCCATTGAGTCCCTGCGGCAAGCTGGAATCAAGGTCTGGGTTCTTACTGGTGATAAGCAGGAGACAGCAATTTCAATTGGTCTCTCTTGCAAACTTCTCACTGCAGATATGCAACAGATTATTATAAATGGCACTTCAGAGGCTGATTGTCGTAATCTTTTGGGTGATGCTAAAGCTAAATATGGCGTGAGGTCTTCAAGTAATCAGAATCGGAAACAAAAATCCAATGCTGGACTTGGTGATCTTGATATTCCCAATGGTTCGAAGTCATTGAGTTTGCCTAAGTGGAATCCAGGACAGGAAGAAGGAAYTACTGCTCCATTGGCACTCATAATTGATGGGAACAGTTTGGTKTATATTTTGGAGAAGGAATTAGAGTCAGAGCTTTTCGACCTGGCAACTTCCTGTAGGGTTGTCTTGTGCTGCCGTGTTGCTCCTTTGCAGAAAGCTGGAATTGTTGCTTTGATAAAGAGCCGCACGGATGATATGACACTGGCAATTGGTGATGGGGCCAATGATGTGTCGATGATCCAAATGGCAGATGTTGGTGTTGGAATATGTGGGCAGGAAGGGCGCCAAGCGGTGATGGCATCAGATTTTGCAATGGGGCAATTTCAGTTCTTGAAAAAATTACTCCTGGTTCATGGGCACTGGAATTATCAGCGTGTGGCTTACTTAATTCTGTACAACTTTTACCGCAATGCTGTCTTTGTATTGATGTTATTCTGGTATATATTATGCACTGCTTTTTCTACAACATCTGCGTTGACAGATTGGAGTAGTGTATTCTATTCTGTGATATACACATCTGTACCTACCATTTTTGTTGGTATTCTGGACAAAGACTTGAGCCATAGGACACTCTTGAAGTATCCGAAGCTGTACACTGCTGGTCACAGGCAAGAGGCATACAATTTGCACTTATTCTGGATCACAATGATTGACACAGTATGGCAGAGCCTTGTTCTCTTCTACACTCCTTTGTTCACATACAAGGATAGTGCGATTGATATATGGAGCATGGGCAGTTTGTGGACAATTGCGGTTGTTATTCTTGTGAATGTACACCTGGCCATGGACATCAACCGTTGGGTATTAATTACTCATGCTGCTGTATGGGGATCAATAATCATTACATATGGTTGCATGATAGTCTTGGATTCAATACCTGTCTTTCCCAATTACTGGACTATTTATCAGCTGGCAGTGTCCCCTACATATTGGATAACCATTTTGCTTATAATTATCGTAGCGCTGCTCCCTCGCTTTACTTGCAAAGTTGTTTGCCAAATCTTTTGGCCTTCAGATATCCAGATAGCCAGAGAAGCTGAGCTACTGAGAAAACGACATAATCATGTGCAGTCGAGGCAACAAGTTTCCAGTTAA 3603 0.4244 MELHDATTNSSSTSVPFEISGSSSQQHVVHHDNRLSSNHNNYSKPQRVRHKSSVQFDDALLHDDSARLIYINDPKRTDDKCELPGNEIRTSKYTIVTFLPKNLFIQFHRVAYLYFLAIAALNQLPPLAVFGRTVSLFPLLFVLCVTAIKDGYEDWRRHRSDRNENNRESLVLQHDDFRPKKWKNIQAGEVVKIFADETIPADMVLLGTSDQSGLAYIQTMNLDGESNLKTRYAKQETTAAVSSEACRVSGVIRCEQPNRNIYEFTANMEFNGLKFSLSQSNIVLRGCQLKNTDWIIGVVVYAGQDTKAMMNSTPSPSKRSKLESYMNRETLWLSIFLFIMCLVVAIGMCLWLVRHNSQLDTLPYYRKRYFNNGPDNRKRYKYYGIPMEAFFSFLSSIIVFQIMIPISLYITMELVRLGQSYFMIEDGDMYDANSGSRFQCRSLNINEDLGQIRYVFSDKTGTLTENKMEFQRASVYGKNYGNSLVVADDTAAPVIPRRRWKLKSEIRVDSELLTVLQSESHGDDRIAAHEFFLTLAACNTVIPIPTGGTFSSPGTSESDEDMEGIEYQGESPDEQALVSAASAYGYTLFERTSGHIVIDVNGEKLRLDVLGLHEFDSVRKRMSVVIRFPNNVVKVLVKGADTTMFSILANDSESHNTIRDVTQSHLNEYSSLGLRTLVVASRDLSDAELEEWQSMYEEASTSLHERAAKLRQTAAFIECNLKLLGATGIEDKLQEGVPEAIESLRQAGIKVWVLTGDKQETAISIGLSCKLLTADMQQIIINGTSEADCRNLLGDAKAKYGVRSSSNQNRKQKSNAGLGDLDIPNGSKSLSLPKWNPGQEEGXTAPLALIIDGNSLVYILEKELESELFDLATSCRVVLCCRVAPLQKAGIVALIKSRTDDMTLAIGDGANDVSMIQMADVGVGICGQEGRQAVMASDFAMGQFQFLKKLLLVHGHWNYQRVAYLILYNFYRNAVFVLMLFWYILCTAFSTTSALTDWSSVFYSVIYTSVPTIFVGILDKDLSHRTLLKYPKLYTAGHRQEAYNLHLFWITMIDTVWQSLVLFYTPLFTYKDSAIDIWSMGSLWTIAVVILVNVHLAMDINRWVLITHAAVWGSIIITYGCMIVLDSIPVFPNYWTIYQLAVSPTYWITILLIIIVALLPRFTCKVVCQIFWPSDIQIAREAELLRKRHNHVQSRQQVSS* 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2120 1200 CDD P-type_ATPase_APLT_Dnf-like 85 1066 - -
Amo04g2120 1200 SUPERFAMILY Calcium ATPase, transmembrane domain M 85 1173 IPR023298 -
Amo04g2120 1200 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 717 772 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo04g2120 1200 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 876 992 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Amo04g2120 1200 Gene3D - 142 312 - -
Amo04g2120 1200 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 60 1198 - -
Amo04g2120 1200 Pfam Phospholipid-translocating ATPase N-terminal 69 134 IPR032631 -
Amo04g2120 1200 MobiDBLite consensus disorder prediction 28 47 - -
Amo04g2120 1200 MobiDBLite consensus disorder prediction 1 23 - -
Amo04g2120 1200 SFLD p-type atpase 440 957 IPR044492 -
Amo04g2120 1200 SUPERFAMILY Calcium ATPase, transduction domain A 167 309 IPR008250 -
Amo04g2120 1200 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 60 1198 - -
Amo04g2120 1200 Pfam Cation transport ATPase (P-type) 569 645 - -
Amo04g2120 1200 Gene3D - 721 946 IPR023214 -
Amo04g2120 1200 Pfam E1-E2 ATPase 170 414 - -
Amo04g2120 1200 ProSitePatterns E1-E2 ATPases phosphorylation site. 458 464 IPR018303 -
Amo04g2120 1200 PRINTS P-type cation-transporting ATPase superfamily signature 456 470 - -
Amo04g2120 1200 PRINTS P-type cation-transporting ATPase superfamily signature 906 925 - -
Amo04g2120 1200 SUPERFAMILY HAD-like 443 950 IPR036412 -
Amo04g2120 1200 Pfam Phospholipid-translocating P-type ATPase C-terminal 934 1174 IPR032630 -
Amo04g2120 1200 Gene3D - 567 702 IPR023299 GO:0000166
Amo04g2120 1200 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 462 737 IPR023299 GO:0000166
Amo04g2120 1200 MobiDBLite consensus disorder prediction 804 839 - -
Amo04g2120 1200 SFLD Haloacid Dehalogenase 440 957 - -
Amo04g2120 1200 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 84 1181 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2120 Amo-Chr4 91212485 91221402 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2120 19 1185 Primary Pumps ATPases AT5G04930 55.915 0.0 1317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2120 K14802 - gmx:100812459 2029.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3059 14 129351250 129359910 Amo04g2120 04 91212485 91221402 hybridization
Amo04g2120 04 91212485 91221402 Amo02g0516 02 6393349 6398231 PCT
Amo02g0516 02 6393349 6398231 Amo04g2120 04 91212485 91221402 PCT