Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2073 ATGGTTATTACGGAGAATATTAGTAATGGTAATAATTTATTGGGTCGTAGGAAGGCAATTGAGGAGCTTGAGAAGGGTCGTGAATTTGCAAACAAGCTTAGGGTTGTGATCAGTGGTGGTGAAGGGGGTGTTGATGGTGAACAACTTGTGGAGAAGGTTCTTATGTCATTCACAAACTCACTCTTGATCTTGAACAAGAACACTGGTTCTAATAATTGTGATGAGGTCTATGATGTTCCTTCTTCATGTGGGATCAATCCAACCAAGTCTGAGGATTCACTTGAGAGTAATTGCAAGAGCTCCGTTCATAAAGAACGTAGAGGGTGTTACAAGAGAAGAAGGACTTCACAAGTATTGGAGAAGGAGTCTGAAGCTCCAATTGATGATGGTCATCAGTGGAGAAAGTATGGCCAAAAAGTTATCCTTAATACCAAACATCCAAGGAACTATTACAGATGCACTCACAAATATGACCAAGGTTGTCTAGCAACAAAACAAGTGCAACAGGTTGAAGATGAACCAACACTTTACAAGACCACATACTATGGAAACCACACTTGTAGGAACAACCTGAACCCTACAATCATATTGGATGAATCCAATGATTCTCCTTCACAATCTTCAATGTTCCTCAGCTTTGATAATTCCCTACCAACAAAACAAGAATGTCCTATTTTCCTCTCATCATCATCTTTAGTAATCAAGAAGGAAGAGGAGTTCAAGGAGGAGGACCTGAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATGTTCCTTCATGTTCTTCAAATGATTACATGATATCTTCGGAGCTTACTTTTGATAACTACTCAACGCATCATCATGTTAATGCTTTATCATCAACACTTGACTCAGATGATGTTATTTCTTATGATCCTTCTCAGCTTGATGATGCCATTGAGCATTTCTTTGTTACTAATATATATTGA 969 0.3643 MVITENISNGNNLLGRRKAIEELEKGREFANKLRVVISGGEGGVDGEQLVEKVLMSFTNSLLILNKNTGSNNCDEVYDVPSSCGINPTKSEDSLESNCKSSVHKERRGCYKRRRTSQVLEKESEAPIDDGHQWRKYGQKVILNTKHPRNYYRCTHKYDQGCLATKQVQQVEDEPTLYKTTYYGNHTCRNNLNPTIILDESNDSPSQSSMFLSFDNSLPTKQECPIFLSSSSLVIKKEEEFKEEDLNNNNNNNNNNNNNNNNNNVPSCSSNDYMISSELTFDNYSTHHHVNALSSTLDSDDVISYDPSQLDDAIEHFFVTNIY* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2073 322 SUPERFAMILY WRKY DNA-binding domain 125 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo04g2073 322 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 13 289 IPR044810 GO:0003700
Amo04g2073 322 PANTHER WRKY TRANSCRIPTION FACTOR 70-RELATED 13 289 - -
Amo04g2073 322 ProSiteProfiles WRKY domain profile. 122 185 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2073 322 Pfam WRKY DNA -binding domain 128 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2073 322 SMART WRKY_cls 127 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo04g2073 322 MobiDBLite consensus disorder prediction 243 268 - -
Amo04g2073 322 MobiDBLite consensus disorder prediction 246 268 - -
Amo04g2073 322 Gene3D WRKY domain 112 189 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2073 Amo-Chr4 90535848 90538475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2073 16 190 WRKY Transcription Factor Family AT3G56400 41.899 4.01e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo04g2073 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2073 - - ahf:112797210 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3058 14 129301412 129304291 Amo04g2073 04 90535848 90538475 hybridization
Amo04g2073 04 90535848 90538475 Amo12g0435 12 7116970 7118519 PCT
Amo12g0435 12 7116970 7118519 Amo04g2073 04 90535848 90538475 PCT