LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo04g2070	ATGGACATGATGATGAATATTGACGAATCCAACAACAACAACAACAACAACAACATGATGAATAGTGATAGTAATAAGTTTCTTTCGTCTATTATGGCTACTGTCATCAACAAGAACACCAACAATTCTTCTTCTTCTTCACCTTCTACCTTCAACATGCCTCATCATCATAACTATACCAGCCACCACCAGCAACAACAACAAACCGCCACAAACACCAACAGCAACGWCGCCGGAAGTAGTAGTWTACAAGTTAGGGATAAGATCATGGCACATCCTCTCTTCCCTCGTCTCTTATCTTCTTACCTTAATTGCTTGAAGGTTGGAGCACCTCCAGAAGTGGTGGGTAGGTTAGAGGAGTTATGTGGAAAGTGTTCATCATCATCATCATCAAGAAGATCAGATAGTAATTCATGCATAGGTGAAGATCCAGGGCTTGATCAGTTCATGGAGGCATATTGTGAGATGCTCATTAAATATGAGCAAGAGATTTCTAAACCCTTCAAAGAAGCCATGCTCTTCTTCTCAACAATTGATTCCCAGCTTAAGGCCCTTTCTCTTTCACCACATTTTGGTACTAATCATCAAAGTGAATCATCATCATCTTTACTACAAAATGAGGTTGATGTGCTTGATGAGAACAACAACAATAATAGGAACATGGATACAAGTCAAGCTGAAGAAGACAGGGAACTAAAGATCCAGCTTCTGAAGAAGTACAGTGGATATCTTGGTGGACTCAAGAAGGAGTTTCTCAAGAAGAAAAAGAATGGAAAGTTGCCAAAAGAAGCTCGTCAGCAGCTTCTTGATTGGTGGAACAGACATTACAAATGGCCTTATCCTTCGGAATCCCAGAAACAGGCACTAGCAGAATCAACAGGGCTAGATTTGAAGCAGATAAACAATTGGTTCATCAATCAGAGGAAACGCCATTGGAAGCCTTCTGAGGACATGCAATTTGCTGTTATGGATGCAACTAACCACTACATGGAAACTATCATGTGCAAGCCATTTCCCATGGATACCATGCCTATTCTATTTTAA	1044	0.4033	MDMMMNIDESNNNNNNNNMMNSDSNKFLSSIMATVINKNTNNSSSSSPSTFNMPHHHNYTSHHQQQQQTATNTNSNXAGSSSXQVRDKIMAHPLFPRLLSSYLNCLKVGAPPEVVGRLEELCGKCSSSSSSRRSDSNSCIGEDPGLDQFMEAYCEMLIKYEQEISKPFKEAMLFFSTIDSQLKALSLSPHFGTNHQSESSSSLLQNEVDVLDENNNNNRNMDTSQAEEDRELKIQLLKKYSGYLGGLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNHYMETIMCKPFPMDTMPILF*	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo04g2070	347	MobiDBLite	consensus disorder prediction	38	85	-	-
	Amo04g2070	347	ProSiteProfiles	ELK domain profile.	231	251	IPR005539	GO:0003677
	Amo04g2070	347	Pfam	Homeobox KN domain	271	310	IPR008422	GO:0003677\|GO:0006355
	Amo04g2070	347	CDD	homeodomain	263	315	IPR001356	GO:0003677
	Amo04g2070	347	PANTHER	HOMEOBOX KNOTTED-LIKE PROTEIN	9	338	-	-
	Amo04g2070	347	ProSiteProfiles	'Homeobox' domain profile.	251	314	IPR001356	GO:0003677
	Amo04g2070	347	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	9	338	-	-
	Amo04g2070	347	MobiDBLite	consensus disorder prediction	38	83	-	-
	Amo04g2070	347	SMART	HOX_1	253	318	IPR001356	GO:0003677
	Amo04g2070	347	MobiDBLite	consensus disorder prediction	1	24	-	-
	Amo04g2070	347	ProSitePatterns	'Homeobox' domain signature.	289	312	IPR017970	GO:0000981\|GO:0006355
	Amo04g2070	347	SUPERFAMILY	Homeodomain-like	253	324	IPR009057	-
	Amo04g2070	347	SMART	KNOX2_2	136	187	IPR005541	GO:0003677\|GO:0005634
	Amo04g2070	347	Pfam	KNOX1 domain	85	125	IPR005540	GO:0003677\|GO:0005634
	Amo04g2070	347	SMART	KNOX1_2	83	127	IPR005540	GO:0003677\|GO:0005634
	Amo04g2070	347	SMART	ELK_2	231	252	IPR005539	GO:0003677
	Amo04g2070	347	Gene3D	-	249	322	-	-
	Amo04g2070	347	Pfam	ELK domain	231	252	IPR005539	GO:0003677
	Amo04g2070	347	Pfam	KNOX2 domain	139	185	IPR005541	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo04g2070	Amo-Chr4	90468989	90473564	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo04g2070	69	341	Homeobox Transcription Factor Family	AT1G62360	60.000	7.99e-102	303

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Amo04g2070		KNOX2	1.7e-20	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo04g2070	-		-	ahf:112702242	546.199