Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo04g2058 | AGTTCTGTTAGATACATAGATCACACTATGAAAATGAAGATGCAATCGTATTGCATATTCCTACTACTGTTTCTGATTCTTTTTACTTCACCAAAACCAGTGCTATCTGATGACACTTCATTCAATGATGATGTTTTGGGTTTGATTGTYTTCAAAGCCGGTTTGGATGATCCAAAGGGTAAACTTTCTTCATGGAATGAAGATGATTTAACCCCTTGCAATTGGGATGGTGTGGATTGTGACCTRTCAACAAAAAGGGTCAATTCCCTTGTTCTTGATGGTTTCTCTCTTTCTGGCCATGTTGATAGAGGACTCTTGAGGCTTCAAAATCTAAAGATTCTCTCACTTGCAAGGAACAACTTCACTGGCACCATAAACCCTGATCTTCCTTCATCACTTGGTGGATTGCAAGTTGTTGACTTTAGTGACAACAATCTCTCTGGTTCAATCCCTGAAGGGTTCTTCAACCAATGTGGCTCTCTTAGAACAGTTTCCTTTGCCAAGAACAACCTCACAGGTAAGGTTCCTGATTCCTTGAGCTCATGCTCCACATTGGTGAATGTTAACTTTTCATACAATCAAATTTCTGGTATATTGCCATCTGGGGTGTGGTTCTTGAGGGCAATACAGTCATTTGATCTGTCAAATAACTTGCTTGAAGGAGAGATTCCTGAGGGAATTAAGAATCTGTATGATTTGAGGGAGTTGAATTTGCAGAATAATCACTTTAGTGGAAAGATTCCTGAAGAAATTGGAGGGTGCTTGGTTTTGAAATCAGTGGATTTGAGTGGTAATTTTCTCTCTGGGGAACTTCCTGAGTCAATGCAAAGACTCACTTCATGCACATCACTCAGTTTGCAGAGAAATTCCCTCACRGGAACCATTCCTGATTGGATTGGAGGGTTGAAAAGTCTAGAGATTTTGGATCTTTCAGCTAATGAACTTTCCGGTTGGATTCCGAAATCATTAGGGAATTTAGACTCACTGCTTAGGTTGAATTTGTCCAGGAATCAGTTCACAAGAAACTTGCCGTTTTCGATGGCGAATTGTTCTAAGCTTTCGACATTCGACATAAGCCAGAATGAATTTTCAGGCCATATTCCTTGGTGGATATTCATAATGGGTTTGCAAGGTTCACCTTTCCATGATCTTGAAGTGTTGGATTTGTCATCCAATGCATTTTCTGGTGAGCTTCCATATGGCATTGGGAACCTTAGCAGTTTGCAAGTGTTGAATGTTTCCGGCAACAATATCTCTGGCTCGATTCCTGTGACCATAGGAGAACTCAAATCTTTYTACATTCTTGATTTGAGTGACAACAAGATTAATGGAAGCATTCCTTCTGAAATTCAAGGTGCAKGTTCACTCAGTGAATTGAGGCTACAAAGGAACTTCCTAAGTGGGAGAATTCCAGCCGAAATCGACAAGTGTTCATCTTTAACATCTTTGATACTTTCTCACAACAAGCTTACTGGTTCAATCCCAGCATCAATTGCAAACCTCACAAATCTTCAATATGTTGATTTGTCATGGAATGAAGTCTCTGGAGGTTTACCGAAGGAGCTTACAAATCTTTCACACCTTCTTGGTTTTAATGTATCCTACAACCAGCTTCAGGGTGAGCTACCAGTGGGTGGATTCTTCAACACCATCTCACCCTCATCTGTCTCCGGCAACTCATTGTTATGTGGTTCTGTTGTCAATCAATCCTGTCCATCCGACCACCCGAAACCTATTGTCTTAAACCCGAATTCTTCAAGTTCCAACTCCAGCATTTCGGCCCAGAATCGCCATCATAAGATCATACTCAGTATCTCAGCTCTTATTGCTATAGGAGCAGCTGCTTTTATAGCAGTTGGTGTGGTGGCTATTACAGTCTTAAACATTCATGTGCGCAATTCAATGGCTCGTTCGGCTGCTCAGTTTGCATTCTCTGGTGGTGAGGACTATAGTGGTTCGCCCGAAAATGATCCAAACTATGGCAAGCTTGTCATGTTTTCTGGTGATGCAGACTTTGCAGATGGAGCTCATAATCTTCTTAATAAAGACAGTGAAATAGGCCGTGGAGGATTCGGAGTTGTTTATCGCACTGTCCTTCGAGACGGCCACTCTGTTGCAATCAAGAAGCTTACAGTGTCCAGTTTGATCAAGTCCCAAGATGACTTTGAAAGGGAAGTGAAAAATCTCGGCAAGGTTAGACACCAAAACCTGGTGACACTCGAAGGCTATTACTGGACTTCATCTTTGCAGCTTCTCATTTATGAGTACTTATCCAAAGGGAGTTTGCATAAACTCCTCCATGATGATAATAACAGCAAAGATGTCTTTTCTTGGAGACAAAGGTTCCGGATTATTCTCGGCATGGCYAAAGGYTTAGCTCATTTGCACCAGATGGACATAATKCATTACAATCTTAAGTCAACCAATGTACTGATTGATTGTTCCAGCGAGGCGAAAATAGGAGARTATGGCCTAGTAAAGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAATTCAAAGCGCGCTCGGCTACATGGCTCCGGAGTTTGCTTGCCGAACAGTTAAGATAACCGAGAAATGTGATGTGTATGGCTTTGGAATCCTTGTTCTTGAGGTGGTGACCGGAAGAAGGCCTGTGGAATACATGGAGGATGATGTGGTTGTTCTTTGTGACATGGTGAGAGGTGCATTGGAGGAAGGCAAGGTTGAGCAATGTGTTGATGGGAGGCTACTTGGTAATTTCGCAGCCGAAGAAGCAATTCCTGTGATCAAATTGGGGTTGATTTGTGCCTCACAAGTGCCGTCGAACCGGCCGGATATGGCCGAGGTAATCAACATACTAGAGTTAATCCAATGCCCTTCAGAAGGACAAGAGGAGTTAGAATGA | 2895 | 0.4204 | SSVRYIDHTMKMKMQSYCIFLLLFLILFTSPKPVLSDDTSFNDDVLGLIVFKAGLDDPKGKLSSWNEDDLTPCNWDGVDCDLSTKRVNSLVLDGFSLSGHVDRGLLRLQNLKILSLARNNFTGTINPDLPSSLGGLQVVDFSDNNLSGSIPEGFFNQCGSLRTVSFAKNNLTGKVPDSLSSCSTLVNVNFSYNQISGILPSGVWFLRAIQSFDLSNNLLEGEIPEGIKNLYDLRELNLQNNHFSGKIPEEIGGCLVLKSVDLSGNFLSGELPESMQRLTSCTSLSLQRNSLTGTIPDWIGGLKSLEILDLSANELSGWIPKSLGNLDSLLRLNLSRNQFTRNLPFSMANCSKLSTFDISQNEFSGHIPWWIFIMGLQGSPFHDLEVLDLSSNAFSGELPYGIGNLSSLQVLNVSGNNISGSIPVTIGELKSFYILDLSDNKINGSIPSEIQGAXSLSELRLQRNFLSGRIPAEIDKCSSLTSLILSHNKLTGSIPASIANLTNLQYVDLSWNEVSGGLPKELTNLSHLLGFNVSYNQLQGELPVGGFFNTISPSSVSGNSLLCGSVVNQSCPSDHPKPIVLNPNSSSSNSSISAQNRHHKIILSISALIAIGAAAFIAVGVVAITVLNIHVRNSMARSAAQFAFSGGEDYSGSPENDPNYGKLVMFSGDADFADGAHNLLNKDSEIGRGGFGVVYRTVLRDGHSVAIKKLTVSSLIKSQDDFEREVKNLGKVRHQNLVTLEGYYWTSSLQLLIYEYLSKGSLHKLLHDDNNSKDVFSWRQRFRIILGMAKGLAHLHQMDIXHYNLKSTNVLIDCSSEAKIGEYGLVKLLPMLDHCVLSSKIQSALGYMAPEFACRTVKITEKCDVYGFGILVLEVVTGRRPVEYMEDDVVVLCDMVRGALEEGKVEQCVDGRLLGNFAAEEAIPVIKLGLICASQVPSNRPDMAEVINILELIQCPSEGQEELE* | 965 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo04g2058 | 964 | SUPERFAMILY | Protein kinase-like (PK-like) | 681 | 954 | IPR011009 | - | |
Amo04g2058 | 964 | SMART | LRR_sd22_2 | 302 | 328 | - | - | |
Amo04g2058 | 964 | SMART | LRR_sd22_2 | 501 | 527 | - | - | |
Amo04g2058 | 964 | SMART | LRR_sd22_2 | 429 | 452 | - | - | |
Amo04g2058 | 964 | SUPERFAMILY | L domain-like | 59 | 371 | - | - | |
Amo04g2058 | 964 | Pfam | Protein kinase domain | 681 | 888 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Amo04g2058 | 964 | Gene3D | Ribonuclease Inhibitor | 324 | 578 | IPR032675 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 501 | 524 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 525 | 549 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 405 | 429 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 230 | 254 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 133 | 157 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 206 | 229 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 302 | 325 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 108 | 132 | IPR003591 | - | |
Amo04g2058 | 964 | SMART | LRR_typ_2 | 326 | 350 | IPR003591 | - | |
Amo04g2058 | 964 | PANTHER | LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED | 19 | 955 | - | - | |
Amo04g2058 | 964 | Pfam | Leucine rich repeat N-terminal domain | 42 | 81 | IPR013210 | - | |
Amo04g2058 | 964 | PANTHER | LEUCINE-RICH RECEPTOR-LIKE KINASE FAMILY PROTEIN | 19 | 955 | - | - | |
Amo04g2058 | 964 | Pfam | Leucine Rich repeat | 406 | 420 | IPR001611 | GO:0005515 | |
Amo04g2058 | 964 | Gene3D | Ribonuclease Inhibitor | 261 | 323 | IPR032675 | - | |
Amo04g2058 | 964 | Gene3D | Phosphorylase Kinase; domain 1 | 669 | 756 | - | - | |
Amo04g2058 | 964 | Gene3D | Ribonuclease Inhibitor | 41 | 260 | IPR032675 | - | |
Amo04g2058 | 964 | Pfam | Leucine rich repeat | 455 | 513 | IPR001611 | GO:0005515 | |
Amo04g2058 | 964 | Pfam | Leucine rich repeat | 282 | 339 | IPR001611 | GO:0005515 | |
Amo04g2058 | 964 | Gene3D | Transferase(Phosphotransferase) domain 1 | 757 | 957 | - | - | |
Amo04g2058 | 964 | Pfam | Leucine Rich Repeat | 233 | 254 | IPR001611 | GO:0005515 | |
Amo04g2058 | 964 | ProSiteProfiles | Protein kinase domain profile. | 680 | 953 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Amo04g2058 | 964 | SUPERFAMILY | RNI-like | 283 | 540 | - | - | |
Amo04g2058 | 964 | ProSitePatterns | Protein kinases ATP-binding region signature. | 686 | 709 | IPR017441 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo04g2058 | Amo-Chr4 | 90358818 | 90362141 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo04g2058 | 20 | 961 | Receptor kinase-like Gene Family | AT5G01890 | 60.372 | 0.0 | 1107 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-VII-1 | Amo04g2058 | Pkinase | 5.6e-39 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo04g2058 | - | - | gmx:100813535 | 1499.18 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Amo14g3049 | 14 | 128957529 | 128961702 | Amo04g2058 | 04 | 90358818 | 90362141 | hybridization | |
Amo04g2058 | 04 | 90358818 | 90362141 | Amo12g2528 | 12 | 108802238 | 108805669 | PCT | |
Amo04g2058 | 04 | 90358818 | 90362141 | Amo02g2719 | 02 | 84215997 | 84219923 | PCT | |
Amo12g2528 | 12 | 108802238 | 108805669 | Amo04g2058 | 04 | 90358818 | 90362141 | PCT | |
Amo02g2719 | 02 | 84215997 | 84219923 | Amo04g2058 | 04 | 90358818 | 90362141 | PCT |