Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2019 ATGAGTTTCAGAGAAGAATCGGTTCCGGAAAGCACTGAGTCAAAATCAGTGAAGCAAAATGGGTTCATAACAGATACTCAGTTAACAATCGATGAGAGCCTTTTGGTTGATCCAAAACTTCTGTTTATAGGGTCCAAGATTGGTGAGGGAGCTCATGGTAAAGTCTATGAAGGAAGGTATGGAGAGAGAATTGTTGCAATCAAAGTTTTAAATCGTGGGAGCACTTCTGAAGAAAGAGCTGCCCTTGAAAATCGGTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCATCATGAGAATCTTGTTAAGTTTATTGGAGCTTGTAAGGATCCTTTGATGGTGATCGTTACAGAATTATTGCCTGGGATGTCACTGAGGAAATACTTAACAAGTATCCGTCCGAAGTTACTAGACCTTCATGTTGCTATAAACTTTGCCCTTGATATTGCTCGGGCCATGGATTGGCTACATGCCAACGGGATCATACATAGAGATCTGAAGCCYGACAATCTGTTGCTTACGGCAAATCAGAAGTCTGTTAAACTTGCAGATTTTGGTCTCGCAAGAGAAGAATCCGTGACTGAAATGATGACAGCAGAAACCGGAACTTACCGATGGATGGCACCAGAGTTGTATAGTACCGTGACATTGCGCCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTGTATAGCTTTGGTATTGTTTTGTGGGAGCTACTAACAAACCGCATGCCTTTCGAAGGGATGTCGAATTTACAGGCTGCTTATGCTGCTGCATTTAAGGGGAGCCTGGTGCACAAGCATCCTGCGTTAACGGAAGGTCCGGAAGGGTGGCACCCAAAAGGTCAAGAGAGGCCTAGCATGCCTGAAGATATATCCCCGGATCTCGCCTTCATCATACAATCATGCTGGGTTGAAGATCCTAACCTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCAYGCTTTCGCCACCGTCTCCTCCCATGCAAGAGCCTGATGAAATCGAGCCTGAGGAAGCGACGACAAGTAATGGTACCATTACTCAGTATTCCGCCCGGAACAGAGGGAAGTTCGCTTTTATTCGCCATTTGTTTTCTTCAAAGAGGACCAAAAACTAA 1143 0.4453 MSFREESVPESTESKSVKQNGFITDTQLTIDESLLVDPKLLFIGSKIGEGAHGKVYEGRYGERIVAIKVLNRGSTSEERAALENRFAREVNMMSRVHHENLVKFIGACKDPLMVIVTELLPGMSLRKYLTSIRPKLLDLHVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKGSLVHKHPALTEGPEGWHPKGQERPSMPEDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNAFLFXLSPPSPPMQEPDEIEPEEATTSNGTITQYSARNRGKFAFIRHLFSSKRTKN* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2019 380 Pfam Protein kinase domain 45 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2019 380 SMART serkin_6 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2019 380 ProSiteProfiles Protein kinase domain profile. 41 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo04g2019 380 Gene3D Phosphorylase Kinase; domain 1 29 120 - -
Amo04g2019 380 MobiDBLite consensus disorder prediction 333 352 - -
Amo04g2019 380 PANTHER SERINE-THREONINE PROTEIN KINASE 9 264 - -
Amo04g2019 380 MobiDBLite consensus disorder prediction 272 292 - -
Amo04g2019 380 ProSitePatterns Protein kinases ATP-binding region signature. 47 68 IPR017441 GO:0005524
Amo04g2019 380 PIRSF TyrPK_CSF1-R 123 265 - -
Amo04g2019 380 PIRSF TyrPK_CSF1-R 283 365 - -
Amo04g2019 380 PIRSF TyrPK_CSF1-R 13 120 - -
Amo04g2019 380 MobiDBLite consensus disorder prediction 274 290 - -
Amo04g2019 380 SUPERFAMILY Protein kinase-like (PK-like) 30 323 IPR011009 -
Amo04g2019 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Amo04g2019 380 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 9 264 - -
Amo04g2019 380 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 285 350 - -
Amo04g2019 380 CDD STKc_MAP3K-like 47 323 - -
Amo04g2019 380 PANTHER SERINE-THREONINE PROTEIN KINASE 285 350 - -
Amo04g2019 380 Gene3D Transferase(Phosphotransferase) domain 1 123 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2019 Amo-Chr4 89580902 89583849 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2019 29 380 MAP Kinase Kinase Kinase AT5G01850 69.681 0.0 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Amo04g2019 Pkinase 2.5e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2019 - - jre:109021493 573.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g3027 14 128010879 128014622 Amo04g2019 04 89580902 89583849 hybridization
Amo04g2019 04 89580902 89583849 Amo12g2331 12 104994140 104998020 PCT
Amo12g2331 12 104994140 104998020 Amo04g2019 04 89580902 89583849 PCT